Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1629

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9996 and 9997 are separated by 791 nucleotides9997 and 9998 are separated by 470 nucleotides mRNA_1628: 9996 - Hypothetical Protein, at 753,218 to 753,980 9996 mRNA_1629: 9997 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 754,772 to 756,288 9997 mRNA_1630: 9998 - SUPERFAMILY--SSF81383, at 756,759 to 757,602 9998

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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753,819 - 9996 mRNA_1628 0.79 +0.5
754,233 + -0.0
754,535 + -0.0
754,686 + -0.1
754,686 - -0.1
755,007 + 9997 mRNA_1629 0.15 -1.3
755,409 - 9997 mRNA_1629 0.42 -0.5
755,410 + 9997 mRNA_1629 0.42 +0.9
755,420 + 9997 mRNA_1629 0.43 +0.1
755,699 + 9997 mRNA_1629 0.61 -0.4
755,852 - 9997 mRNA_1629 0.71 -0.1
755,863 + 9997 mRNA_1629 0.72 -1.2
756,390 + +0.7
756,568 - +0.5
756,573 + +0.3
756,985 - 9998 mRNA_1630 0.27 +0.1
757,006 - 9998 mRNA_1630 0.29 -0.1
757,018 - 9998 mRNA_1630 0.31 +0.0
757,266 + 9998 mRNA_1630 0.60 -1.6

Or see this region's nucleotide sequence