Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1633

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10000 and 10001 are separated by 740 nucleotides10001 and 10002 are separated by 179 nucleotides mRNA_1632: 10000 - K00036 G6PD, zwf glucose-6-phosphate 1-dehydrogenase, at 760,062 to 761,705 10000 mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762,446 to 764,135 10001 mRNA_1634: 10002 - HMMPfam-alpha/beta hydrolase fold-PF07859,ProSitePatterns-Lipolytic enzymes G-D-X-G family, putative serine active site.-PS01174,SUPERFAMILY--SSF53474, at 764,315 to 766,210 10002

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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761,918 - -0.1
761,932 - -0.1
761,940 + -1.4
761,963 + +1.4
762,101 + +1.4
762,235 - -1.4
762,240 - -0.7
762,250 + -0.1
762,282 - -0.3
762,295 + -0.6
762,707 + 10001 mRNA_1633 0.15 -2.0
763,145 - 10001 mRNA_1633 0.41 -0.0
763,319 - 10001 mRNA_1633 0.52 -1.3
763,686 - 10001 mRNA_1633 0.73 -0.6
763,697 - 10001 mRNA_1633 0.74 +0.2
764,029 + +0.5
764,245 - +0.2
764,261 + -0.8
764,263 - -0.1
764,263 - +0.7
764,269 - +0.3
764,430 - -2.3
764,821 - 10002 mRNA_1634 0.27 +0.3

Or see this region's nucleotide sequence