Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1719

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10086 and 10087 are separated by 785 nucleotides10087 and 10088 are separated by 639 nucleotides mRNA_1718: 10086 - HMMPfam-Cytochrome C oxidase copper chaperone (COX17)-PF05051,SUPERFAMILY--SSF47072, at 26,598 to 27,052 10086 mRNA_1719: 10087 - Hypothetical Protein, at 27,838 to 28,571 10087 mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29,211 to 32,060 10088

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
27,099 + -0.3
27,101 - -0.0
27,102 + -0.5
27,105 - -1.6
27,136 + -1.1
27,226 - -0.4
27,527 - +0.2
27,536 + -0.2
27,660 - +0.0
27,683 - -1.5
27,694 - -2.7
27,711 - -1.8
27,777 + -0.8
27,983 - 10087 mRNA_1719 0.20 -0.4
28,111 - 10087 mRNA_1719 0.37 +0.1
28,156 + 10087 mRNA_1719 0.43 -0.1
28,359 - 10087 mRNA_1719 0.71 +1.2
28,380 - 10087 mRNA_1719 0.74 -0.6
28,426 - 10087 mRNA_1719 0.80 -1.4
28,545 - +1.2
28,694 - +2.0
28,716 - -0.1
28,757 + -0.6
29,016 - -0.1
29,145 - -1.7
29,145 - +0.2
29,449 + +0.1

Or see this region's nucleotide sequence