Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1722

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10089 and 10090 are separated by 540 nucleotides mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32,428 to 34,334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34,875 to 37,390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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34,606 + -0.3
34,704 + +1.0
34,710 + +0.3
34,717 + +0.0
34,753 - -2.6
34,868 + +1.1
34,948 - +0.2
35,013 - +1.0
35,040 + +0.3
35,159 - 10090 mRNA_1722 0.11 -0.6
35,168 + 10090 mRNA_1722 0.12 -1.4
35,466 + 10090 mRNA_1722 0.23 -0.2
35,672 + 10090 mRNA_1722 0.32 +0.2
35,841 + 10090 mRNA_1722 0.38 -0.1
36,014 + 10090 mRNA_1722 0.45 +0.3
36,174 - 10090 mRNA_1722 0.52 -0.0
36,204 + 10090 mRNA_1722 0.53 +0.7
36,285 + 10090 mRNA_1722 0.56 -0.9
36,292 + 10090 mRNA_1722 0.56 -1.0
36,324 + 10090 mRNA_1722 0.58 -1.2
36,375 + 10090 mRNA_1722 0.60 -0.2
36,465 + 10090 mRNA_1722 0.63 -2.2
36,602 + 10090 mRNA_1722 0.69 -0.9
36,611 + 10090 mRNA_1722 0.69 +0.6
36,720 - 10090 mRNA_1722 0.73 +0.2
36,746 + 10090 mRNA_1722 0.74 -0.8
36,965 + 10090 mRNA_1722 0.83 -1.3
37,032 - 10090 mRNA_1722 0.86 -1.0
37,050 - 10090 mRNA_1722 0.86 -0.6
37,145 + +0.2
37,166 + +0.9
37,194 - -0.0
37,194 + +0.1
37,356 + -0.2
37,457 + -1.1
37,470 + -1.6
37,473 + -1.8
37,476 + +0.7
37,481 + +1.0
37,501 + +0.8
37,595 + -2.6
37,628 + -0.6
37,631 + -1.1
37,660 + +0.8
37,703 - +0.3
37,717 - -0.8
37,735 - -2.3
37,831 - -0.3
37,837 + -0.5
37,921 - +0.3
37,933 - -1.3
37,934 + -2.6
37,934 + -0.6
37,938 + +0.8
37,950 - -0.1
37,951 + -3.0
37,984 - -1.6
38,063 + +0.7
38,063 - +0.3
38,074 - -1.1
38,075 - -0.1
38,083 + -0.4
38,091 - -2.5
38,140 - +0.0
38,248 - +0.1
38,249 - +0.5
38,366 + +0.1
38,384 + +0.1

Or see this region's nucleotide sequence