Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1765

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10132 and 10133 are separated by 206 nucleotides mRNA_1764: 10132 - KOG0867 Glutathione S-transferase, at 147,844 to 149,167 10132 mRNA_1765: 10133 - HMMPfam-FUN14 family-PF04930, at 149,374 to 150,218 10133

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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148,605 + 10132 mRNA_1764 0.57 -0.6
148,781 + 10132 mRNA_1764 0.71 -0.3
148,785 - 10132 mRNA_1764 0.71 -1.3
148,791 + 10132 mRNA_1764 0.72 +0.4
148,858 + 10132 mRNA_1764 0.77 +0.1
148,898 - 10132 mRNA_1764 0.80 -3.8
149,051 - -0.3
149,057 - +0.3
149,072 + +1.1
149,215 - -1.3
149,218 + -1.4
149,239 - +1.9
149,250 - -1.0
149,263 + -0.3
149,272 + -0.1
149,359 + -0.9
149,457 + +0.6
149,684 + 10133 mRNA_1765 0.37 +0.2
149,800 - 10133 mRNA_1765 0.50 -3.1
149,801 + 10133 mRNA_1765 0.51 -2.9
149,936 + 10133 mRNA_1765 0.67 -1.2
149,962 - 10133 mRNA_1765 0.70 +1.3
150,065 + 10133 mRNA_1765 0.82 -0.8
150,117 + 10133 mRNA_1765 0.88 -2.6
150,176 + +0.5
150,267 + -0.6
150,400 + -0.9
150,416 + -0.2
150,651 - -0.6
150,900 + -1.6
150,960 - -0.2
151,019 - -0.9
151,027 - +0.1
151,035 + -0.6
151,129 + +1.3
151,146 + -0.8
151,157 + -0.2
151,163 + -1.0
151,168 + +0.2

Or see this region's nucleotide sequence