Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1766

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10134 and 10135 are separated by 364 nucleotides mRNA_1766: 10134 - K03097 CSNK2A casein kinase II subunit alpha, at 151,982 to 154,408 10134 mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154,773 to 156,142 10135

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
151,019 - -0.9
151,027 - +0.1
151,035 + -0.6
151,129 + +1.3
151,146 + -0.8
151,157 + -0.2
151,163 + -1.0
151,168 + +0.2
151,545 + -0.2
151,566 + -1.4
151,566 - -0.1
151,595 + -2.2
151,748 + -0.1
151,749 - +0.6
151,896 + -1.4
151,907 + +0.4
151,912 + -1.2
152,169 - -1.0
152,183 - +0.4
152,200 + +0.2
152,767 + 10134 mRNA_1766 0.32 -3.0
152,782 - 10134 mRNA_1766 0.33 -1.2
153,058 - 10134 mRNA_1766 0.44 +0.8
153,247 - 10134 mRNA_1766 0.52 -0.9
153,254 + 10134 mRNA_1766 0.52 -0.3
153,351 + 10134 mRNA_1766 0.56 -0.0
153,649 - 10134 mRNA_1766 0.69 -0.9
153,823 + 10134 mRNA_1766 0.76 -3.1
153,876 + 10134 mRNA_1766 0.78 +0.1
153,942 + 10134 mRNA_1766 0.81 -2.4
154,279 - -1.0
154,316 + -2.0
154,510 + +0.2
154,553 - -0.1
154,553 - +0.5
154,553 - -1.2
154,634 + -0.7
154,640 + +1.4
154,676 - +1.6
154,984 - 10135 mRNA_1767 0.15 +0.3
155,128 - 10135 mRNA_1767 0.26 -0.0

Or see this region's nucleotide sequence