Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1790

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10157 and 10158 are separated by 261 nucleotides10158 and 10159 are separated by 248 nucleotides10159 and 10160 are separated by 273 nucleotides mRNA_1789: 10157 - K10573 UBE2A, UBC2, RAD6A ubiquitin-conjugating enzyme E2 A, at 210,969 to 211,922 10157 mRNA_1790: 10158 - Hypothetical Protein, at 212,184 to 213,881 10158 mRNA_1791: 10159 - Hypothetical Protein, at 214,130 to 214,450 10159 mRNA_1792: 10160 - Hypothetical Protein, at 214,724 to 215,217 10160

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
211,962 + -0.2
211,964 + -0.0
211,967 - -1.0
211,968 + -1.5
211,979 - +0.6
212,059 + +0.8
212,097 + -1.9
212,441 + 10158 mRNA_1790 0.15 -1.1
212,707 - 10158 mRNA_1790 0.31 -0.1
212,988 - 10158 mRNA_1790 0.47 -0.1
212,988 + 10158 mRNA_1790 0.47 -1.2
213,004 - 10158 mRNA_1790 0.48 +0.3
213,007 - 10158 mRNA_1790 0.48 +1.1
213,123 - 10158 mRNA_1790 0.55 +0.3
213,168 - 10158 mRNA_1790 0.58 -0.3
213,239 - 10158 mRNA_1790 0.62 -3.4
213,442 + 10158 mRNA_1790 0.74 -1.0
213,564 + 10158 mRNA_1790 0.81 -0.9
213,706 - 10158 mRNA_1790 0.90 +0.3
214,016 - -0.7
214,019 + +0.9
214,162 - 10159 mRNA_1791 0.10 -0.1
214,184 + 10159 mRNA_1791 0.17 +0.4
214,190 - 10159 mRNA_1791 0.19 +0.4
214,319 - 10159 mRNA_1791 0.59 -0.5
214,323 - 10159 mRNA_1791 0.60 -0.5
214,328 - 10159 mRNA_1791 0.62 +1.1
214,335 - 10159 mRNA_1791 0.64 +0.5
214,336 - 10159 mRNA_1791 0.64 -1.1
214,336 - 10159 mRNA_1791 0.64 -0.3
214,337 + 10159 mRNA_1791 0.64 -0.9
214,347 + 10159 mRNA_1791 0.68 -0.5
214,349 - 10159 mRNA_1791 0.68 -2.0
214,357 + 10159 mRNA_1791 0.71 -1.9
214,367 + 10159 mRNA_1791 0.74 +0.1
214,384 - 10159 mRNA_1791 0.79 -0.3
214,461 - -1.0
214,467 + -1.1
214,473 - -0.3
214,484 - +0.2
214,485 + +1.5
214,486 + -0.9
214,520 - -0.0
214,549 - -1.5
214,628 - -0.2
214,772 - -0.3
214,786 - 10160 mRNA_1792 0.13 +0.7

Or see this region's nucleotide sequence