Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1835

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10202 and 10203 are separated by 380 nucleotides mRNA_1834: 10202 - Hypothetical Protein, at 323,054 to 324,268 10202 mRNA_1835: 10203 - K10601 SYVN1, HRD1 E3 ubiquitin-protein ligase synoviolin, at 324,649 to 327,501 10203

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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323,983 - 10202 mRNA_1834 0.76 -0.5
324,373 - -1.1
324,383 - +0.9
324,813 + -1.1
325,115 - 10203 mRNA_1835 0.16 -1.3
325,846 - 10203 mRNA_1835 0.42 -3.7
326,323 - 10203 mRNA_1835 0.59 -0.4
326,473 + 10203 mRNA_1835 0.64 -0.0
326,608 + 10203 mRNA_1835 0.69 -0.0
326,877 + 10203 mRNA_1835 0.78 -0.1
326,913 + 10203 mRNA_1835 0.79 +0.2
327,059 + 10203 mRNA_1835 0.84 -0.2
327,335 - -0.5
327,347 + +2.0
327,356 + -1.0
327,358 + -1.7
327,611 + -0.5
327,629 + -0.9
327,650 - -0.5
327,651 + +0.5
327,782 - -0.0
327,813 + -1.2
327,817 + +0.2
328,027 - +0.9
328,122 + -1.2
328,228 - -1.4
328,263 + -2.2

Or see this region's nucleotide sequence