Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1839

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10206 and 10207 are separated by 100 nucleotides10207 and 10208 are separated by 385 nucleotides mRNA_1838: 10206 - K04486 E3.1.3.15B histidinol-phosphatase (PHP family), at 336,405 to 337,627 10206 mRNA_1839: 10207 - Hypothetical Protein, at 337,728 to 339,625 10207 mRNA_1840: 10208 - Hypothetical Protein, at 340,011 to 340,722 10208

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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337,638 - +0.1
338,096 + 10207 mRNA_1839 0.19 -2.1
338,214 + 10207 mRNA_1839 0.26 +1.1
338,532 + 10207 mRNA_1839 0.42 +0.8
338,609 + 10207 mRNA_1839 0.46 -1.2
338,638 - 10207 mRNA_1839 0.48 -0.9
338,674 - 10207 mRNA_1839 0.50 -0.1
338,693 + 10207 mRNA_1839 0.51 +0.9
338,817 + 10207 mRNA_1839 0.57 +0.3
338,853 - 10207 mRNA_1839 0.59 -1.1
338,946 - 10207 mRNA_1839 0.64 +1.0
338,954 + 10207 mRNA_1839 0.65 -0.7
338,973 + 10207 mRNA_1839 0.66 +1.4
339,113 - 10207 mRNA_1839 0.73 +0.5
339,387 - 10207 mRNA_1839 0.87 -1.2
339,411 + 10207 mRNA_1839 0.89 -0.0
339,724 + -0.9
339,862 - -1.1
339,880 - +1.0
339,882 + +0.2
339,999 + -0.3
340,444 + 10208 mRNA_1840 0.61 -0.4
340,604 - 10208 mRNA_1840 0.83 -0.1

Or see this region's nucleotide sequence