Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1840

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10207 and 10208 are separated by 385 nucleotides mRNA_1839: 10207 - Hypothetical Protein, at 337,728 to 339,625 10207 mRNA_1840: 10208 - Hypothetical Protein, at 340,011 to 340,722 10208

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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339,113 - 10207 mRNA_1839 0.73 +0.5
339,387 - 10207 mRNA_1839 0.87 -1.2
339,411 + 10207 mRNA_1839 0.89 -0.0
339,724 + -0.9
339,862 - -1.1
339,880 - +1.0
339,882 + +0.2
339,999 + -0.3
340,444 + 10208 mRNA_1840 0.61 -0.4
340,604 - 10208 mRNA_1840 0.83 -0.1
340,763 - -0.6
340,880 - -2.0
340,915 - +0.4
341,009 - -0.3
341,048 + +0.0
341,049 - +0.9
341,056 + -0.2
341,320 - +1.3
341,333 + -0.0
341,338 - -1.5
341,350 - -0.2
341,466 - +1.1
341,488 + -3.7
341,570 + -1.9
341,600 + +0.9
341,608 + +0.0
341,609 - +0.0
341,610 + -0.9
341,618 + -2.0
341,629 - -0.6
341,640 + +1.5
341,666 + -0.1
341,666 + -0.4
341,668 + -2.9
341,670 - +0.5
341,692 + -0.1
341,708 - +0.4
341,718 + +0.5

Or see this region's nucleotide sequence