Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1841

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10209 and 10210 are separated by 579 nucleotides mRNA_1841: 10209 - KOG4476 Gluconate transport-inducing protein, at 342,756 to 344,236 10209 mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344,816 to 347,199 10210

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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341,780 - +1.4
341,783 + +0.0
341,788 + -0.3
341,790 - +0.8
341,796 - +1.0
341,824 - -0.5
341,825 - -1.4
341,846 - -0.8
341,847 + -0.5
341,849 - +0.6
341,853 - -3.3
341,857 + -0.5
341,866 + -1.6
341,868 - -0.5
341,869 + +0.4
341,871 + -1.5
341,880 + +0.1
341,889 - -0.0
341,889 + -0.7
341,889 - +1.1
341,892 + +0.1
341,892 + +0.8
341,892 + -1.5
341,904 - +0.3
341,908 - -2.0
341,908 - +0.5
341,908 - -0.0
341,908 + +0.4
341,909 - -0.7
341,909 + -0.9
341,911 + +0.1
341,911 + +0.4
341,916 + -0.7
341,921 - -0.2
341,922 + +0.4
341,924 - +0.4
341,924 + +0.5
341,925 + -2.7
341,928 + -0.7
341,942 - -1.2
341,952 - -0.5
341,969 + +1.1
341,974 + -0.4
341,993 + -2.6
341,994 + -0.0
342,016 - -0.5
342,018 - +0.7
342,025 - +0.6
342,027 + +0.5
342,029 + +0.7
342,034 - +0.5
342,054 - +0.8
342,071 + -0.5
342,076 + +0.8
342,082 + -0.9
342,090 - +1.2
342,097 - +1.7
342,099 + -1.8
342,108 + +0.3
342,122 - -0.4
342,141 - +0.4
342,142 + -1.4
342,155 - +1.4
342,160 + -0.7
342,160 + -1.8
342,175 + -1.0
342,175 + -1.0
342,187 - +0.1
342,222 + +0.5
342,238 + +0.0
342,239 - +0.3
342,240 + +0.1
342,254 + -1.4
342,269 - -0.1
342,370 - +0.7
342,371 - -0.6
342,374 + +0.8
342,376 + +0.1
342,381 + -1.6
342,383 + -0.4
342,386 - -0.0
342,390 - -4.0
342,392 + -0.6
342,394 + +0.8
342,396 - +0.3
342,398 - +0.9
342,400 + +0.1
342,422 + -0.2
342,425 - +1.5
342,437 - -1.9
342,438 - -0.6
342,449 - +0.9
342,450 - -0.1
342,451 - -0.5
342,455 - +0.3
342,458 + -0.5
342,458 + -0.1
342,463 - -0.0
342,467 - -2.1
342,468 + +0.8
342,475 + +0.6
342,482 - +0.2
342,486 - -0.6
342,491 + -1.4
342,493 - -0.7
342,506 + +1.0
342,514 + -1.9
342,519 - -0.4
342,528 + +1.7
342,531 - +0.1
342,531 + -0.8
342,554 + +0.5
342,562 + -1.1
342,566 - -1.4
342,566 + -0.4
342,577 + -0.3
342,577 + +0.6
342,605 - +0.1
342,609 - -0.2
342,621 - +0.6
342,627 - -1.6
342,637 - +0.3
342,702 - -0.9
342,708 - -1.4
342,803 + +0.9
342,808 - +1.0
342,815 - +0.8
342,818 + -1.9
342,824 + +1.4
342,826 + +0.2
342,840 + +0.1
342,861 + +0.5
342,975 + 10209 mRNA_1841 0.15 -0.6
343,087 - 10209 mRNA_1841 0.22 -0.9
343,121 + 10209 mRNA_1841 0.25 +0.5
343,140 + 10209 mRNA_1841 0.26 -0.1
343,284 - 10209 mRNA_1841 0.36 -1.4
343,296 + 10209 mRNA_1841 0.36 +1.0
343,539 + 10209 mRNA_1841 0.53 -0.6
343,715 - 10209 mRNA_1841 0.65 -1.4
344,164 - -0.5
344,262 - +1.2
344,331 - -0.8
344,560 - -0.0
344,567 + -2.8
344,583 - -1.1
344,590 - -0.2
344,610 - +1.1
344,643 - -0.3
344,653 + -1.8
344,691 + +0.3
344,693 - -1.5
344,704 + +0.4
344,704 - +0.1
344,727 + +0.1
344,748 + -0.3
344,863 - -0.2
345,015 + -1.6
345,034 - +0.0

Or see this region's nucleotide sequence