Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1881

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10248 and 10249 are separated by 583 nucleotides10249 and 10250 are separated by 679 nucleotides mRNA_1880: 10248 - KOG0254 Predicted transporter (major facilitator superfamily), at 424,298 to 426,105 10248 mRNA_1881: 10249 - K11770 SFH1 chromatin structure-remodeling complex subunit SFH1, at 426,689 to 428,081 10249 mRNA_1882: 10250 - HMMPfam-S4 domain-PF01479,ProSitePatterns-Ribosomal protein S4 signature.-PS00632,ProSiteProfiles-S4 RNA-binding domain profile.-PS50889,SMART-S4 RNA-binding domain-SM00363,SUPERFAMILY--SSF55174, at 428,761 to 429,844 10250

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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425,747 - 10248 mRNA_1880 0.80 -2.3
426,016 - +0.0
426,195 - -0.6
426,321 - -1.5
426,326 + +0.8
426,340 + -1.2
426,344 + -0.3
426,395 - -1.2
426,397 - -1.3
426,446 - +0.6
426,465 + -3.4
426,466 + -1.1
426,473 + -0.4
426,475 - -0.0
426,476 + -1.3
426,481 + +0.7
426,487 - -0.1
426,488 + -1.2
426,489 - -0.2
426,491 + -0.9
426,494 + +0.7
426,496 + -0.6
426,496 + -0.7
426,496 + +0.6
426,497 + +1.2
426,497 + +0.6
426,527 - -1.0
426,529 - -1.7
426,532 + -2.9
426,532 + +0.9
426,638 + -1.6
426,703 + +1.1
426,728 + -0.0
428,209 + +0.3
428,296 + -0.2
428,428 - -0.9
428,460 + +0.3
428,600 - +0.5
428,609 + +2.0
428,740 - -0.6

Or see this region's nucleotide sequence