Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1965

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10332 and 10333 are separated by 563 nucleotides mRNA_1964: 10332 - K01495 GCH1, folE GTP cyclohydrolase I, at 621,166 to 622,157 10332 mRNA_1965: 10333 - K11422 SETD1, SET1 histone-lysine N-methyltransferase SETD1, at 622,721 to 626,978 10333

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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622,426 + -0.5
622,432 + -0.5
622,583 + +0.3
622,593 + -1.2
622,682 + -2.2
622,714 - +0.5
623,037 + -4.1
623,613 + 10333 mRNA_1965 0.21 +0.0
624,315 - 10333 mRNA_1965 0.37 -2.3
624,577 + 10333 mRNA_1965 0.44 -1.5
624,741 - 10333 mRNA_1965 0.47 -0.5
625,165 - 10333 mRNA_1965 0.57 -1.7
625,750 + 10333 mRNA_1965 0.71 -1.0
625,945 + 10333 mRNA_1965 0.76 -3.3
626,630 - -0.3
626,730 - -1.4
626,779 + -1.6
626,792 - -2.6
627,654 + -0.6
627,670 + +0.4
627,670 + -0.8
627,672 + -0.2
627,809 + -0.2
627,813 + -0.2
627,813 - -2.2
627,819 - +0.9
627,823 - +1.1

Or see this region's nucleotide sequence