Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1988

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10355 and 10356 are separated by 59 nucleotides mRNA_1987: 10355 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 677,107 to 679,198 10355 mRNA_1988: 10356 - KOG1674 Cyclin, at 679,258 to 681,059 10356

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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678,779 - 10355 mRNA_1987 0.80 -0.3
678,981 - 10355 mRNA_1987 0.90 -2.4
679,171 + -1.5
679,198 + +0.0
679,209 + -3.4
679,414 - -1.7
679,455 - 10356 mRNA_1988 0.11 -0.4
679,691 + 10356 mRNA_1988 0.24 -1.3
679,760 - 10356 mRNA_1988 0.28 -0.5
679,773 - 10356 mRNA_1988 0.29 -2.2
679,997 + 10356 mRNA_1988 0.41 +0.2
680,108 - 10356 mRNA_1988 0.47 -0.9
680,124 - 10356 mRNA_1988 0.48 +0.2
680,131 + 10356 mRNA_1988 0.48 -1.0
680,198 + 10356 mRNA_1988 0.52 -0.1
680,926 - -0.3
681,517 + +1.4
681,800 + -0.0
681,822 - -0.4
681,822 - +0.3
681,908 + -1.1
681,952 - -0.3
681,982 + -1.7
681,987 + -1.4
681,989 + -0.1

Or see this region's nucleotide sequence