Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1999

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10366 and 10367 are separated by 451 nucleotides10367 and 10368 are separated by 236 nucleotides mRNA_1998: 10366 - K08869 ADCK, ABC1 aarF domain-containing kinase, at 704,179 to 706,336 10366 mRNA_1999: 10367 - Hypothetical Protein, at 706,788 to 707,404 10367 mRNA_2000: 10368 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 707,641 to 708,923 10368

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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705,920 - 10366 mRNA_1998 0.81 -0.5
706,128 - -0.7
706,447 + +1.7
706,849 + +0.4
706,897 + 10367 mRNA_1999 0.18 -1.4
706,914 + 10367 mRNA_1999 0.20 -1.6
706,916 + 10367 mRNA_1999 0.21 -0.7
707,071 + 10367 mRNA_1999 0.46 -0.4
707,347 + -0.3
707,572 + +0.1
707,645 + -0.4
707,941 + 10368 mRNA_2000 0.23 -0.1
708,062 - 10368 mRNA_2000 0.33 -0.6
708,079 - 10368 mRNA_2000 0.34 +0.1
708,213 + 10368 mRNA_2000 0.45 +0.8
708,247 + 10368 mRNA_2000 0.47 -0.6

Or see this region's nucleotide sequence