Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2002

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10370 and 10371 are separated by 159 nucleotides mRNA_2002: 10370 - HMMPfam-NAD(P)-binding Rossmann-like domain-PF13450,SUPERFAMILY--SSF51971, at 712,088 to 714,509 10370 mRNA_2003: 10371 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 714,669 to 717,655 10371

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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711,168 - -1.2
711,168 - +0.8
711,328 + -0.4
711,433 - +1.4
711,931 + -0.4
712,078 + -1.3
712,278 - -0.8
714,556 - +0.3
714,566 - +0.4
714,571 - -0.1
714,575 - -0.2
714,577 + +1.0
714,578 + -0.1
714,580 - +1.0
714,580 - -1.4
714,580 - +0.2
714,580 - -0.4
714,584 - -1.4
714,588 + -1.6
714,601 - -0.8
714,602 + +1.9
714,607 + -0.9
714,643 + -1.4
714,644 + -3.1
714,645 + -0.5
714,649 - +0.3
714,662 + -2.4
714,664 - -0.9
714,671 - -0.5
714,679 - -0.2
714,770 + +0.8
714,776 - -0.1
714,795 + +2.2
715,485 + 10371 mRNA_2003 0.27 +2.7

Or see this region's nucleotide sequence