Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2114

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10482 and 10483 are separated by 162 nucleotides mRNA_2114: 10482 - K10768 ALKBH6 alkylated DNA repair protein alkB homolog 6, at 105,978 to 107,393 10482 mRNA_2115: 10483 - BLAST integral membrane protein [Stemphylium lycopersici], at 107,556 to 109,708 10483

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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105,581 - -0.7
105,818 + -0.1
105,833 + +1.1
105,859 - +1.2
105,989 + +0.1
106,171 - 10482 mRNA_2114 0.14 -1.0
106,224 - 10482 mRNA_2114 0.17 +1.9
106,233 + 10482 mRNA_2114 0.18 -0.1
106,244 + 10482 mRNA_2114 0.19 -1.5
106,437 - 10482 mRNA_2114 0.32 -0.1
106,645 + 10482 mRNA_2114 0.47 +0.1
106,656 - 10482 mRNA_2114 0.48 +0.4
106,725 + 10482 mRNA_2114 0.53 -0.4
106,810 + 10482 mRNA_2114 0.59 -0.9
106,969 + 10482 mRNA_2114 0.70 -1.3
106,972 + 10482 mRNA_2114 0.70 +0.7
107,095 - 10482 mRNA_2114 0.79 -0.1
107,103 - 10482 mRNA_2114 0.79 -0.4
107,117 + 10482 mRNA_2114 0.80 +0.3
107,304 + +0.7
107,421 - +1.7
107,423 + -0.3
107,423 + +1.2
107,436 + +1.1
107,438 - +1.6
107,444 + -0.1
107,490 - -0.3
107,562 - -0.7
107,577 - -0.1
107,580 - +0.2
107,591 - +0.1
107,627 + -2.8
107,992 - 10483 mRNA_2115 0.20 -0.4
108,029 + 10483 mRNA_2115 0.22 -3.1
108,040 + 10483 mRNA_2115 0.22 +1.0
108,082 + 10483 mRNA_2115 0.24 -2.3
108,157 - 10483 mRNA_2115 0.28 -1.1
108,176 - 10483 mRNA_2115 0.29 +1.2
108,208 - 10483 mRNA_2115 0.30 +0.1
108,314 + 10483 mRNA_2115 0.35 -0.3

Or see this region's nucleotide sequence