Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2132

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10499 and 10500 are separated by 406 nucleotides10500 and 10501 are separated by 456 nucleotides mRNA_2131: 10499 - K09580 PDIA1, P4HB protein disulfide-isomerase A1, at 141,323 to 143,619 10499 mRNA_2132: 10500 - Hypothetical Protein, at 144,026 to 145,888 10500 mRNA_2133: 10501 - ProSitePatterns-Zinc finger RanBP2-type signature.-PS01358,ProSiteProfiles-Zinc finger RanBP2 type profile.-PS50199,SMART-Zinc finger domain-SM00547,SUPERFAMILY--SSF90209, at 146,345 to 148,532 10501

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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143,345 - 10499 mRNA_2131 0.88 -1.9
143,404 - +0.5
143,629 + +1.7
143,660 - -0.2
143,682 + -0.4
143,690 + +0.5
143,754 - +1.3
143,816 - +0.4
143,824 - -0.3
143,825 + -0.3
143,835 - +1.6
143,843 + -2.7
143,844 + -0.1
143,916 - -0.4
143,961 - +0.1
143,966 + -0.3
144,074 - +0.9
144,099 - -0.7
144,099 + +0.2
144,105 - -0.4
144,112 - +0.2
144,571 - 10500 mRNA_2132 0.29 -1.8
145,191 + 10500 mRNA_2132 0.63 +0.5
145,193 - 10500 mRNA_2132 0.63 +0.5
145,269 - 10500 mRNA_2132 0.67 +0.2
145,280 + 10500 mRNA_2132 0.67 -0.1
145,463 - 10500 mRNA_2132 0.77 -0.7
146,535 - +0.4

Or see this region's nucleotide sequence