Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2166

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10533 and 10534 are separated by 726 nucleotides10534 and 10535 are separated by 217 nucleotides mRNA_2165: 10533 - Hypothetical Protein, at 233,429 to 233,973 10533 mRNA_2166: 10534 - Hypothetical Protein, at 234,700 to 236,014 10534 mRNA_2167: 10535 - K03143 TFIIH3, GTF2H3, TFB4 transcription initiation factor TFIIH subunit 3, at 236,232 to 237,790 10535

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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233,731 + 10533 mRNA_2165 0.55 -2.5
233,793 - 10533 mRNA_2165 0.67 +0.5
233,803 + 10533 mRNA_2165 0.69 +0.7
234,097 + -0.9
234,099 - -1.2
234,115 + +1.0
234,188 - -0.4
234,279 + -0.6
234,406 - -1.6
234,413 + +0.2
234,493 - +0.6
234,811 - -1.0
234,826 - -0.7
234,834 - 10534 mRNA_2166 0.10 +0.4
234,834 - 10534 mRNA_2166 0.10 -0.4
234,981 - 10534 mRNA_2166 0.21 -0.1
235,130 - 10534 mRNA_2166 0.33 -0.4
235,268 + 10534 mRNA_2166 0.43 -0.7
235,278 - 10534 mRNA_2166 0.44 -1.5
235,297 + 10534 mRNA_2166 0.45 -0.3
235,335 + 10534 mRNA_2166 0.48 +0.2
235,716 - 10534 mRNA_2166 0.77 +0.7
235,792 + 10534 mRNA_2166 0.83 -0.9
235,880 - 10534 mRNA_2166 0.90 +0.3
236,018 - +1.2
236,022 - -0.5
236,033 + -1.3
236,072 + -0.3
236,078 + +0.5

Or see this region's nucleotide sequence