Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2170

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10537 and 10538 are separated by 84 nucleotides10538 and 10539 are separated by 419 nucleotides mRNA_2169: 10537 - Hypothetical Protein, at 239,219 to 240,668 10537 mRNA_2170: 10538 - K20294 COG7 conserved oligomeric Golgi complex subunit 7, at 240,753 to 243,794 10538 mRNA_2171: 10539 - K06877 K06877 DEAD/DEAH box helicase domain-containing protein, at 244,214 to 249,218 10539

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
239,844 + 10537 mRNA_2169 0.43 -0.7
239,905 - 10537 mRNA_2169 0.47 -0.3
240,128 + 10537 mRNA_2169 0.63 -0.2
240,181 - 10537 mRNA_2169 0.66 -1.4
240,277 - 10537 mRNA_2169 0.73 -1.3
240,336 - 10537 mRNA_2169 0.77 -1.2
240,438 - 10537 mRNA_2169 0.84 -0.5
240,602 + -1.1
240,823 - -1.1
240,909 + +0.5
240,914 + -2.2
241,049 + -2.8
241,314 + 10538 mRNA_2170 0.18 +0.1
241,632 - 10538 mRNA_2170 0.29 -0.9
241,657 + 10538 mRNA_2170 0.30 +1.1
241,776 + 10538 mRNA_2170 0.34 -2.4
241,777 - 10538 mRNA_2170 0.34 -1.2
242,348 - 10538 mRNA_2170 0.52 +1.8
242,386 - 10538 mRNA_2170 0.54 +2.2
242,556 + 10538 mRNA_2170 0.59 -0.0
242,568 + 10538 mRNA_2170 0.60 +1.9
242,807 + 10538 mRNA_2170 0.68 +0.1
242,984 - 10538 mRNA_2170 0.73 +0.1
243,112 + 10538 mRNA_2170 0.78 -1.5
243,260 - 10538 mRNA_2170 0.82 -0.4
243,889 + +0.9
244,018 - -1.5
244,023 - +0.9
244,023 + -0.1
244,162 + +0.3
244,163 - +1.5
244,163 - +0.2
244,182 - -0.7
244,188 + +0.3
244,272 + +0.6
244,455 - -0.1
244,489 + +0.8
244,624 - -1.1
244,626 + -0.1

Or see this region's nucleotide sequence