Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2221

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10588 and 10589 are separated by 281 nucleotides10589 and 10590 are separated by 249 nucleotides mRNA_2220: 10588 - K14411 MSI RNA-binding protein Musashi, at 388,707 to 390,951 10588 mRNA_2221: 10589 - KOG0379 Kelch repeat-containing proteins, at 391,233 to 393,813 10589 mRNA_2222: 10590 - K14801 TSR4 pre-rRNA-processing protein TSR4, at 394,063 to 398,428 10590

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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391,152 + +0.7
391,165 - +0.3
391,180 + +0.3
391,186 - -0.5
391,198 + +0.1
391,467 + -0.3
391,573 + 10589 mRNA_2221 0.13 -0.1
391,586 + 10589 mRNA_2221 0.14 -0.3
392,059 - 10589 mRNA_2221 0.32 -1.4
392,188 - 10589 mRNA_2221 0.37 -1.6
392,197 - 10589 mRNA_2221 0.37 +0.2
392,385 + 10589 mRNA_2221 0.45 -0.0
392,420 - 10589 mRNA_2221 0.46 +0.4
393,251 + 10589 mRNA_2221 0.78 -0.2
393,550 - 10589 mRNA_2221 0.90 -0.2
393,687 - +0.9
393,787 - -0.2
393,849 - -0.5
393,862 - +0.1
394,009 - +0.2
394,156 - -0.6
394,162 - +1.2

Or see this region's nucleotide sequence