Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2457

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_2457: 10825 - K10589 UBE3C ubiquitin-protein ligase E3 C, at 177,733 to 180,454 10825

177.0177.5178.0178.5179.0179.5180.0180.5181.0Position (kb)-4.5-4.0-3.5-3.0-2.5-2.0-1.5-1.0-0.50.00.51.01.5Average Strain Fitness

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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176,771 - -0.3
176,777 + -0.0
176,809 + -0.8
176,945 + +0.0
177,580 - +0.3
178,532 + 10825 mRNA_2457 0.29 -0.7
179,128 + 10825 mRNA_2457 0.51 -2.9
179,286 - 10825 mRNA_2457 0.57 -0.1
179,342 - 10825 mRNA_2457 0.59 +0.2
179,432 + 10825 mRNA_2457 0.62 +0.4
179,437 - 10825 mRNA_2457 0.63 -4.3
179,869 + 10825 mRNA_2457 0.78 +1.1
179,871 - 10825 mRNA_2457 0.79 -1.5
180,119 - 10825 mRNA_2457 0.88 -0.3
180,293 - -0.6
180,444 + +0.4
180,602 + -1.5
180,935 - -3.0
180,954 - +0.3
180,966 - -2.1
181,074 - -0.8
181,095 + -0.0
181,241 - -0.8
181,253 - +0.1
181,274 + +0.8

Or see this region's nucleotide sequence