Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2471

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10839 and 10840 are separated by 513 nucleotides mRNA_2471: 10839 - K13104 ZNF830, CCDC16 zinc finger protein 830, at 227,199 to 228,171 10839 mRNA_2472: 10840 - K07836 RAP1B Ras-related protein Rap-1B, at 228,685 to 229,666 10840

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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226,723 - -0.3
226,726 + +0.7
226,734 + -0.2
226,737 - +0.3
226,738 - +0.1
226,739 + -3.0
226,749 + +1.4
226,774 - -0.4
226,896 + -0.2
226,916 + +0.1
227,052 + -0.0
227,497 - 10839 mRNA_2471 0.31 -0.3
227,655 - 10839 mRNA_2471 0.47 +0.4
228,073 + 10839 mRNA_2471 0.90 +1.4
228,073 - 10839 mRNA_2471 0.90 -0.9
228,088 - -0.3
228,170 - -1.5
228,217 - +1.0
228,218 + +0.1
228,335 - +0.4
228,346 - +0.1
228,348 - +0.2
228,360 + +0.9
228,367 + -0.5
228,372 + -0.8
228,464 - +0.2
228,466 + -1.2
228,523 - +0.6
228,644 - +0.3
228,757 - -0.6

Or see this region's nucleotide sequence