Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2691

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11058 and 11059 are separated by 964 nucleotides11059 and 11060 are separated by 195 nucleotides mRNA_2690: 11058 - ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 13,747 to 14,595 11058 mRNA_2691: 11059 - Hypothetical Protein, at 15,560 to 16,423 11059 mRNA_2692: 11060 - K06656 PCL1 G1/S-specific cyclin PLC1, at 16,619 to 17,964 11060

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
14,561 + -2.0
14,567 - +0.2
14,567 - +0.6
14,570 + -0.5
14,571 - -0.5
14,571 - -0.3
14,572 + +0.6
14,572 + -2.7
14,573 + -2.4
14,576 + -1.8
14,576 - -0.1
14,579 + +1.2
14,582 - +1.0
14,587 + -1.6
14,588 + -0.6
14,590 - +0.4
14,592 + +0.5
14,612 - +1.3
14,628 + -2.4
14,634 + +0.0
14,636 - -0.1
14,654 + -1.0
14,656 - +0.9
14,662 + +1.1
14,662 - -0.8
14,669 + -0.9
14,675 + -0.2
14,675 + -1.8
14,676 - +0.5
14,701 - -0.9
14,718 - +0.2
14,727 - -3.7
14,729 + -1.6
14,745 + -0.9
14,763 - -0.5
14,770 + +0.7
14,787 + +0.9
14,800 - -0.9
14,805 + -0.9
14,828 + +0.5
14,828 + +0.3
14,832 - -0.3
14,833 - -0.3
14,850 - +0.1
14,922 - -0.0
14,929 + +1.6
14,932 + +0.3
14,954 - -0.1
14,958 - +0.2
14,959 + +0.2
14,968 + -1.7
14,972 + +1.0
14,975 + +0.0
14,976 + +0.3
14,982 - +0.6
14,983 - -0.2
14,983 + -1.4
14,986 - -0.0
14,992 + -1.1
14,999 + +0.1
15,002 - +1.1
15,015 - +0.0
15,043 + -0.9
15,048 - +1.4
15,048 - -1.4
15,048 - +0.8
15,049 - -1.5
15,053 - -0.1
15,054 + +0.8
15,054 - -0.5
15,056 - +1.0
15,066 + -1.1
15,071 + -2.6
15,073 + -1.3
15,077 - +0.3
15,097 - -2.4
15,104 + -0.4
15,161 + -0.9
15,162 - -0.3
15,174 - +1.5
15,197 + -1.7
15,206 - -0.2
15,208 - -0.5
15,211 - +0.1
15,230 + -0.3
15,241 + +0.6
15,247 - +0.4
15,248 - +2.2
15,254 + -0.4
15,255 + +0.2
15,255 + -0.0
15,258 - -0.4
15,260 + -0.5
15,266 - -0.5
15,269 + -1.4
15,272 + +0.3
15,276 - -0.2
15,280 - -1.4
15,286 - -1.1
15,288 - -0.7
15,320 - -0.5
15,333 - +0.1
15,335 - -1.6
15,367 - +0.0
15,381 + +0.5
15,385 - -1.4
15,405 - -1.2
15,413 + +0.7
15,426 + -1.8
15,444 + +0.7
15,476 + +0.0
15,520 - -3.1
15,520 - -0.3
15,552 - -2.1
15,555 + -0.3
15,557 + -2.1
15,561 + +1.1
15,562 - -1.3
15,563 - -0.5
15,570 + -0.5
15,576 - -0.2
15,576 - +0.3
15,579 - -1.7
15,600 - +0.0
15,601 - -1.8
15,637 - -0.5
15,638 - -0.2
15,643 - -0.4
15,648 + 11059 mRNA_2691 0.10 -0.0
15,653 + 11059 mRNA_2691 0.11 -0.2
15,654 + 11059 mRNA_2691 0.11 +1.3
15,657 + 11059 mRNA_2691 0.11 +0.9
15,669 + 11059 mRNA_2691 0.13 -0.4
15,670 - 11059 mRNA_2691 0.13 -1.5
15,679 - 11059 mRNA_2691 0.14 +3.0
15,680 + 11059 mRNA_2691 0.14 +1.7
15,688 - 11059 mRNA_2691 0.15 -0.1
15,706 + 11059 mRNA_2691 0.17 +0.4
15,711 - 11059 mRNA_2691 0.17 +0.2
15,711 + 11059 mRNA_2691 0.17 -0.5
15,711 + 11059 mRNA_2691 0.17 +0.1
15,711 + 11059 mRNA_2691 0.17 -1.0
15,716 + 11059 mRNA_2691 0.18 -1.6
15,727 - 11059 mRNA_2691 0.19 -3.6
15,728 + 11059 mRNA_2691 0.19 -0.8
15,737 + 11059 mRNA_2691 0.20 -2.4
15,749 - 11059 mRNA_2691 0.22 +1.4
15,752 + 11059 mRNA_2691 0.22 +0.4
15,774 - 11059 mRNA_2691 0.25 -0.2
15,775 + 11059 mRNA_2691 0.25 -1.8
15,777 + 11059 mRNA_2691 0.25 +0.5
15,781 - 11059 mRNA_2691 0.26 +0.1
15,820 - 11059 mRNA_2691 0.30 +0.8
15,834 + 11059 mRNA_2691 0.32 -0.2
15,834 + 11059 mRNA_2691 0.32 -0.6
15,843 + 11059 mRNA_2691 0.33 -3.1
15,851 - 11059 mRNA_2691 0.34 -2.9
15,858 + 11059 mRNA_2691 0.34 -0.5
15,859 + 11059 mRNA_2691 0.35 +0.9
15,864 - 11059 mRNA_2691 0.35 -0.9
15,864 + 11059 mRNA_2691 0.35 -0.1
15,864 - 11059 mRNA_2691 0.35 +1.1
15,864 + 11059 mRNA_2691 0.35 -2.1
15,865 + 11059 mRNA_2691 0.35 +0.2
15,867 + 11059 mRNA_2691 0.36 +0.3
15,880 + 11059 mRNA_2691 0.37 -1.2
15,997 - 11059 mRNA_2691 0.51 -0.8
16,001 + 11059 mRNA_2691 0.51 +1.0
16,022 - 11059 mRNA_2691 0.53 -0.5
16,022 - 11059 mRNA_2691 0.53 +1.1
16,138 - 11059 mRNA_2691 0.67 +2.2
16,153 - 11059 mRNA_2691 0.69 -0.2
16,155 + 11059 mRNA_2691 0.69 -1.0
16,174 + 11059 mRNA_2691 0.71 +0.0
16,177 + 11059 mRNA_2691 0.71 -1.3
16,184 + 11059 mRNA_2691 0.72 +1.1
16,185 + 11059 mRNA_2691 0.72 -1.8
16,213 - 11059 mRNA_2691 0.76 +0.4
16,214 - 11059 mRNA_2691 0.76 -0.4
16,309 + 11059 mRNA_2691 0.87 +0.2
16,319 - 11059 mRNA_2691 0.88 +0.1
16,322 - 11059 mRNA_2691 0.88 -0.1
16,340 - -0.4
16,344 - -2.4
16,350 - +0.3
16,361 + -0.8
16,365 + -0.5
16,372 + -1.0
16,379 - +1.5
16,508 - +0.4
16,510 + +0.0
16,526 + -1.4
16,644 + -0.4
16,669 + +0.6
16,828 - 11060 mRNA_2692 0.16 -3.0
16,851 + 11060 mRNA_2692 0.17 -0.8
16,948 - 11060 mRNA_2692 0.24 +0.0
16,960 - 11060 mRNA_2692 0.25 +0.8
16,979 - 11060 mRNA_2692 0.27 +1.1
17,114 - 11060 mRNA_2692 0.37 -0.5
17,255 - 11060 mRNA_2692 0.47 -0.7
17,261 - 11060 mRNA_2692 0.48 +0.7

Or see this region's nucleotide sequence