Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2719

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11086 and 11087 are separated by 228 nucleotides11087 and 11088 are separated by 348 nucleotides mRNA_2718: 11086 - SUPERFAMILY--SSF50475, at 72,649 to 73,814 11086 mRNA_2719: 11087 - Hypothetical Protein, at 74,043 to 75,833 11087 mRNA_2720: 11088 - Hypothetical Protein, at 76,182 to 76,700 11088

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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73,147 + 11086 mRNA_2718 0.43 +0.7
73,399 + 11086 mRNA_2718 0.64 -1.1
73,415 + 11086 mRNA_2718 0.66 -0.6
73,445 - 11086 mRNA_2718 0.68 +2.4
73,452 - 11086 mRNA_2718 0.69 -0.4
73,538 + 11086 mRNA_2718 0.76 -0.6
73,553 - 11086 mRNA_2718 0.78 +0.8
73,583 + 11086 mRNA_2718 0.80 +0.8
73,697 - 11086 mRNA_2718 0.90 -0.5
73,700 - -0.9
73,718 - +0.9
73,756 + -0.9
73,827 - -0.3
73,844 + -0.4
73,989 - -1.3
73,992 + +0.4
73,996 + +0.7
73,997 + -2.8
74,005 + -0.8
74,008 - +0.8
74,011 - +0.2
74,015 - -1.1
74,023 - -0.2
74,051 - +0.2
74,074 - -1.4
74,075 + +0.9
74,079 + -1.5
74,092 + +0.4
74,094 + +1.2
74,126 + +0.6
74,184 + +0.1
74,188 + -1.0
74,236 - 11087 mRNA_2719 0.11 +0.3
74,242 - 11087 mRNA_2719 0.11 -2.5
74,246 + 11087 mRNA_2719 0.11 +0.2
74,250 + 11087 mRNA_2719 0.12 -1.7
74,252 + 11087 mRNA_2719 0.12 -0.1
74,258 + 11087 mRNA_2719 0.12 +0.4
74,265 + 11087 mRNA_2719 0.12 +0.5
74,267 + 11087 mRNA_2719 0.13 +0.9
74,269 + 11087 mRNA_2719 0.13 -0.1
74,390 - 11087 mRNA_2719 0.19 -0.5
74,398 + 11087 mRNA_2719 0.20 +0.2
74,536 - 11087 mRNA_2719 0.28 +2.3
74,538 + 11087 mRNA_2719 0.28 -1.5
74,562 + 11087 mRNA_2719 0.29 -1.5
74,643 + 11087 mRNA_2719 0.34 -0.3
74,873 + 11087 mRNA_2719 0.46 +3.5
74,893 - 11087 mRNA_2719 0.47 -0.6
75,541 + 11087 mRNA_2719 0.84 -0.4
75,703 - -3.2
75,817 + -0.1
75,820 - -1.3
75,826 - -0.2
75,841 + +1.2
75,842 + -0.7
75,845 + -0.5
75,848 + -0.6
75,851 + -0.5
76,148 + -0.8
76,294 - 11088 mRNA_2720 0.22 -0.2
76,315 + 11088 mRNA_2720 0.26 -2.1
76,317 - 11088 mRNA_2720 0.26 +0.1
76,421 - 11088 mRNA_2720 0.46 +0.2
76,458 + 11088 mRNA_2720 0.53 +0.9
76,459 - 11088 mRNA_2720 0.53 +0.3
76,460 - 11088 mRNA_2720 0.54 +0.2
76,468 + 11088 mRNA_2720 0.55 -0.9
76,507 + 11088 mRNA_2720 0.63 -0.2
76,573 - 11088 mRNA_2720 0.75 -0.9
76,605 - 11088 mRNA_2720 0.82 -0.2
76,696 - +0.7
76,720 + +1.4
76,720 + -4.0
76,739 + -1.1
76,777 - +0.1
76,782 - +1.2
76,789 + -1.3
76,799 - +2.0
76,809 + +0.1
76,816 - +2.2
76,829 - +0.6

Or see this region's nucleotide sequence