Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2727

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11094 and 11095 are separated by 268 nucleotides11095 and 11096 are separated by 275 nucleotides mRNA_2726: 11094 - K01725 cynS cyanate lyase, at 84,881 to 85,852 11094 mRNA_2727: 11095 - Hypothetical Protein, at 86,121 to 88,745 11095 mRNA_2728: 11096 - Hypothetical Protein, at 89,021 to 89,898 11096

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
85,197 + 11094 mRNA_2726 0.33 -0.1
85,208 + 11094 mRNA_2726 0.34 -0.1
85,489 - 11094 mRNA_2726 0.63 +0.3
85,503 - 11094 mRNA_2726 0.64 -2.5
85,761 + +0.6
85,785 - +0.5
85,908 + -1.5
85,926 - -0.8
85,949 + +0.3
85,961 - +0.5
85,970 + +0.4
85,978 + +0.5
85,986 + -0.9
86,033 + -1.2
86,033 - +0.2
86,042 - +0.4
86,044 + +0.6
86,067 + -2.2
86,072 + -1.2
86,080 + -0.6
86,102 + +0.1
86,634 - 11095 mRNA_2727 0.20 -0.6
86,708 - 11095 mRNA_2727 0.22 +0.9
86,799 - 11095 mRNA_2727 0.26 +0.9
86,819 + 11095 mRNA_2727 0.27 -0.3
87,841 - 11095 mRNA_2727 0.66 -1.1
87,842 + 11095 mRNA_2727 0.66 -0.5
88,550 + +0.4
88,686 + -1.4
88,713 - -0.3
88,858 + -0.0
89,155 + 11096 mRNA_2728 0.15 +0.4
89,421 - 11096 mRNA_2728 0.46 -0.3
89,520 - 11096 mRNA_2728 0.57 -0.3
89,596 + 11096 mRNA_2728 0.65 +0.8
89,608 + 11096 mRNA_2728 0.67 -1.3
89,719 - 11096 mRNA_2728 0.79 -1.2
89,724 + 11096 mRNA_2728 0.80 -0.1
89,725 + 11096 mRNA_2728 0.80 +1.1

Or see this region's nucleotide sequence