Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2823

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11190 and 11191 are separated by 479 nucleotides11191 and 11192 are separated by 104 nucleotides mRNA_2822: 11190 - SUPERFAMILY--SSF52047, at 301,729 to 303,000 11190 mRNA_2823: 11191 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 303,480 to 304,770 11191 mRNA_2824: 11192 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 304,875 to 305,755 11192

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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302,659 - 11190 mRNA_2822 0.73 -0.4
303,362 + -0.7
303,509 + +0.9
303,567 + -0.7
303,671 - 11191 mRNA_2823 0.15 -0.6
303,757 - 11191 mRNA_2823 0.21 -0.6
303,782 - 11191 mRNA_2823 0.23 -0.2
303,796 + 11191 mRNA_2823 0.24 +0.7
303,939 - 11191 mRNA_2823 0.36 +0.4
303,945 + 11191 mRNA_2823 0.36 +1.4
303,952 - 11191 mRNA_2823 0.37 -0.4
303,962 + 11191 mRNA_2823 0.37 -0.3
303,964 + 11191 mRNA_2823 0.37 -1.4
304,045 - 11191 mRNA_2823 0.44 -0.2
304,090 + 11191 mRNA_2823 0.47 +0.3
304,091 - 11191 mRNA_2823 0.47 +0.4
304,118 - 11191 mRNA_2823 0.49 +0.1
304,131 + 11191 mRNA_2823 0.50 -2.1
304,134 - 11191 mRNA_2823 0.51 -2.7
304,237 - 11191 mRNA_2823 0.59 +1.3
304,294 - 11191 mRNA_2823 0.63 +0.0
304,294 - 11191 mRNA_2823 0.63 +0.2
304,300 + 11191 mRNA_2823 0.64 -1.5
304,300 + 11191 mRNA_2823 0.64 +0.4
304,321 - 11191 mRNA_2823 0.65 +1.0
304,386 - 11191 mRNA_2823 0.70 -0.9
304,400 + 11191 mRNA_2823 0.71 -0.2
304,485 - 11191 mRNA_2823 0.78 -0.9
304,526 - 11191 mRNA_2823 0.81 -2.0
304,555 + 11191 mRNA_2823 0.83 +0.5
304,582 + 11191 mRNA_2823 0.85 -0.4
304,832 + -0.1
304,832 + -1.4
305,177 - 11192 mRNA_2824 0.34 +1.8
305,269 - 11192 mRNA_2824 0.45 -1.9
305,467 - 11192 mRNA_2824 0.67 +0.4
305,590 + 11192 mRNA_2824 0.81 +0.7
305,739 - +0.6

Or see this region's nucleotide sequence