Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_2835

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11202 and 11203 are separated by 158 nucleotides11203 and 11204 are separated by 324 nucleotides mRNA_2834: 11202 - K01001 ALG7 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase, at 324,460 to 326,344 11202 mRNA_2835: 11203 - K00022 HADH 3-hydroxyacyl-CoA dehydrogenase, at 326,503 to 328,205 11203 mRNA_2836: 11204 - HMMPfam-Putative zinc finger motif, C2HC5-type-PF06221, at 328,530 to 330,386 11204

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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326,085 + 11202 mRNA_2834 0.86 -0.0
326,399 + -0.4
326,449 - +0.2
326,453 - +0.9
326,465 + -0.9
326,466 + -0.2
326,597 + +0.3
326,615 + -0.5
326,616 - -0.7
326,753 + 11203 mRNA_2835 0.15 +1.0
326,789 + 11203 mRNA_2835 0.17 -0.8
326,841 + 11203 mRNA_2835 0.20 -1.3
326,907 + 11203 mRNA_2835 0.24 -2.2
327,192 + 11203 mRNA_2835 0.40 -0.6
327,335 - 11203 mRNA_2835 0.49 -1.5
327,760 + 11203 mRNA_2835 0.74 -1.9
328,040 - +0.5
328,046 + +0.5
328,210 - +0.5
328,334 - -0.7
328,352 + -1.6
328,355 + +0.5
328,396 + -0.6
328,432 - -1.1
328,477 - -0.5
328,519 + -0.8
328,772 - 11204 mRNA_2836 0.13 -0.4
328,898 - 11204 mRNA_2836 0.20 +1.4
328,911 + 11204 mRNA_2836 0.21 -1.9
328,926 - 11204 mRNA_2836 0.21 +0.1
329,068 + 11204 mRNA_2836 0.29 +0.2

Or see this region's nucleotide sequence