Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3079

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11446 and 11447 are separated by 384 nucleotides11447 and 11448 are separated by 272 nucleotides mRNA_3078: 11446 - K01613 psd, PISD phosphatidylserine decarboxylase, at 265,905 to 270,528 11446 mRNA_3079: 11447 - HMMPfam-DNA polymerase Ligase (LigD)-PF13298, at 270,913 to 272,289 11447 mRNA_3080: 11448 - HMMPfam-Ferritin-like domain-PF13668,SUPERFAMILY--SSF47240, at 272,562 to 274,087 11448

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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269,922 - 11446 mRNA_3078 0.87 +1.1
269,924 - 11446 mRNA_3078 0.87 +0.4
269,982 + 11446 mRNA_3078 0.88 -0.8
270,119 + -0.5
270,132 - -0.2
270,172 - -0.5
270,278 + -2.7
270,280 + -3.4
270,282 - -3.3
270,407 - -2.1
270,407 - +0.4
270,407 - -0.8
270,415 - +0.5
270,538 + -0.8
270,558 + -0.6
270,569 - +0.6
270,578 + +0.1
270,579 + -1.9
270,700 - -0.3
270,701 - +0.6
270,701 - +0.4
270,711 + +0.0
270,717 + -1.3
270,721 - -0.8
270,728 - +0.3
270,732 + -0.5
270,857 - -1.0
270,859 - -4.7
270,890 + -1.4
271,039 - -0.1
271,163 - 11447 mRNA_3079 0.18 +0.2
271,182 - 11447 mRNA_3079 0.20 +1.4
271,327 + 11447 mRNA_3079 0.30 -1.0
271,423 - 11447 mRNA_3079 0.37 +0.4
271,488 + 11447 mRNA_3079 0.42 +1.1
271,602 - 11447 mRNA_3079 0.50 +0.0
271,625 + 11447 mRNA_3079 0.52 +0.3
271,650 - 11447 mRNA_3079 0.54 -1.0
271,669 - 11447 mRNA_3079 0.55 -1.2
271,710 - 11447 mRNA_3079 0.58 -1.5
271,710 - 11447 mRNA_3079 0.58 +1.4
271,757 - 11447 mRNA_3079 0.61 -0.2
271,906 + 11447 mRNA_3079 0.72 -1.4
271,953 + 11447 mRNA_3079 0.76 -0.8
272,120 - 11447 mRNA_3079 0.88 -0.5
272,174 + -0.0
272,189 + +1.4
272,331 + -0.3
272,339 + -0.3
272,466 - +2.5
272,493 - -1.5
272,581 + +0.9
272,620 - -0.5
272,903 - 11448 mRNA_3080 0.22 -0.4
273,232 - 11448 mRNA_3080 0.44 +0.6

Or see this region's nucleotide sequence