Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3123

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11490 and 11491 are separated by 122 nucleotides11491 and 11492 are separated by 156 nucleotides mRNA_3122: 11490 - K05290 PIGK phosphatidylinositol glycan, class K, at 370,199 to 371,731 11490 mRNA_3123: 11491 - HMMPfam-Ribosomal RNA adenine dimethylase-PF00398,SUPERFAMILY--SSF53335, at 371,854 to 373,401 11491 mRNA_3124: 11492 - K04079 HSP90A, htpG molecular chaperone HtpG, at 373,558 to 376,751 11492

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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370,895 + 11490 mRNA_3122 0.45 -1.4
370,924 - 11490 mRNA_3122 0.47 -2.2
371,004 - 11490 mRNA_3122 0.53 +0.5
371,042 + 11490 mRNA_3122 0.55 -1.7
371,044 + 11490 mRNA_3122 0.55 -0.1
371,170 - 11490 mRNA_3122 0.63 +0.2
371,203 - 11490 mRNA_3122 0.65 -0.1
371,315 - 11490 mRNA_3122 0.73 +0.2
371,518 - 11490 mRNA_3122 0.86 -0.5
371,629 - +0.8
371,640 + +0.1
371,640 + -0.5
371,774 + -1.2
371,774 - +1.3
371,775 - -1.3
371,776 - -0.5
371,785 + -0.5
371,786 - +0.8
371,795 + -0.4
371,803 + +1.0
371,804 + -0.1
371,806 + -1.8
371,814 - -0.3
371,817 + -2.4
371,917 + -2.1
371,931 + -0.3
371,934 + -1.4
371,947 + +0.9
371,953 - -0.7
371,954 - +0.2
371,957 + -0.7
372,078 - 11491 mRNA_3123 0.14 +2.1
372,079 - 11491 mRNA_3123 0.15 -1.6
372,080 + 11491 mRNA_3123 0.15 -0.2
372,081 - 11491 mRNA_3123 0.15 -2.9
372,089 - 11491 mRNA_3123 0.15 -0.3
372,105 - 11491 mRNA_3123 0.16 -0.6
372,116 + 11491 mRNA_3123 0.17 -0.9
372,222 + 11491 mRNA_3123 0.24 -0.8
372,244 + 11491 mRNA_3123 0.25 -1.0
372,247 + 11491 mRNA_3123 0.25 -0.2
372,513 - 11491 mRNA_3123 0.43 -0.0
372,516 + 11491 mRNA_3123 0.43 +0.4
372,522 + 11491 mRNA_3123 0.43 -0.2
372,538 + 11491 mRNA_3123 0.44 -2.1
372,782 - 11491 mRNA_3123 0.60 +0.0
372,782 + 11491 mRNA_3123 0.60 +0.2
372,818 - 11491 mRNA_3123 0.62 -0.6
372,832 - 11491 mRNA_3123 0.63 +0.2
372,940 - 11491 mRNA_3123 0.70 +1.2
372,960 - 11491 mRNA_3123 0.71 +0.3
372,971 - 11491 mRNA_3123 0.72 +0.9
372,976 - 11491 mRNA_3123 0.72 +0.4
373,090 + 11491 mRNA_3123 0.80 +1.1
373,098 + 11491 mRNA_3123 0.80 +1.7
373,114 - 11491 mRNA_3123 0.81 -0.8
373,245 - 11491 mRNA_3123 0.90 -0.4
373,336 + -1.6
373,391 + +0.3
373,393 + -0.4
373,547 - -0.4
373,652 - -1.0
373,654 - -3.3
373,663 + -0.1
373,667 - +1.6
373,669 - +0.0
373,670 - +0.1
373,676 + +0.4
373,684 - +0.5
373,684 - -2.1
373,684 - +0.8
373,688 - +0.2
373,691 + -0.4
373,692 - -0.5
373,700 - +0.8
373,702 + -0.4
373,702 + +0.4
373,704 + +0.8
373,706 + +0.3
373,712 + -0.4
373,718 - -0.6
373,719 + -1.7
373,720 - +0.8
373,805 - +2.9
373,830 - +0.8
373,832 - -0.1
373,833 + +0.4
373,841 + -0.5
373,842 - -0.3
373,845 - -0.6
373,847 + +0.3
373,862 + +0.2
373,872 - -0.3
373,991 - 11492 mRNA_3124 0.14 +0.9
373,994 + 11492 mRNA_3124 0.14 -0.3
374,008 - 11492 mRNA_3124 0.14 +2.2
374,012 + 11492 mRNA_3124 0.14 +0.1
374,018 + 11492 mRNA_3124 0.14 -1.6
374,025 - 11492 mRNA_3124 0.15 +0.6
374,032 - 11492 mRNA_3124 0.15 -1.1
374,176 - 11492 mRNA_3124 0.19 -0.6
374,176 - 11492 mRNA_3124 0.19 +0.3
374,286 + 11492 mRNA_3124 0.23 +1.3
374,331 - 11492 mRNA_3124 0.24 -0.3
374,341 + 11492 mRNA_3124 0.25 +0.0

Or see this region's nucleotide sequence