Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3154

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11521 and 11522 are separated by 295 nucleotides mRNA_3153: 11521 - BLAST serine proline rich protein [Moniliophthora rorer..., at 439,382 to 440,661 11521 mRNA_3154: 11522 - K14831 MAK16 protein MAK16, at 440,957 to 442,475 11522

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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440,096 + 11521 mRNA_3153 0.56 +0.1
440,332 - 11521 mRNA_3153 0.74 -0.6
440,340 + 11521 mRNA_3153 0.75 +0.5
440,495 - 11521 mRNA_3153 0.87 +0.2
440,508 + 11521 mRNA_3153 0.88 +0.0
440,639 - +0.2
440,692 + -4.4
440,928 - -1.9
440,945 - -1.9
440,973 - -0.0
441,230 - 11522 mRNA_3154 0.18 -0.5
441,364 + 11522 mRNA_3154 0.27 -1.1
441,385 + 11522 mRNA_3154 0.28 -1.0
441,487 - 11522 mRNA_3154 0.35 -0.6
441,546 - 11522 mRNA_3154 0.39 -0.7
441,926 - 11522 mRNA_3154 0.64 -0.2
441,980 + 11522 mRNA_3154 0.67 +2.0
442,193 - 11522 mRNA_3154 0.81 -0.8
442,202 + 11522 mRNA_3154 0.82 -1.3
442,229 + 11522 mRNA_3154 0.84 +0.3
442,370 - +0.2
442,376 - -1.2
442,521 - -0.4
442,527 + -0.2
442,528 + -1.5
442,543 + -0.4
442,567 + +0.2
442,665 - -1.1
442,665 - +0.3
442,666 + +0.2
442,667 + -1.7
442,667 + -1.1
442,670 + +0.1
442,671 - +1.1
442,674 - -0.8
442,676 - -0.7
442,681 + +0.9
442,689 - -1.5
442,692 - +0.0
442,693 + +0.5
442,695 + +0.4
442,711 + +0.7
442,729 + +0.6
442,807 + -0.8
442,808 + -2.2
442,843 - -1.1
442,850 - +0.0
442,919 - +2.5
442,963 + -0.8
442,970 + -0.8
442,984 - +0.7
442,984 - -0.1
442,995 - +1.2
442,997 - -0.7
442,997 - +0.1
443,002 + +0.3
443,003 - +0.1
443,011 - +1.1
443,015 + -0.9
443,022 + -0.1
443,026 - +0.7
443,030 + -2.9
443,033 - +1.6
443,049 + +0.0
443,051 - -0.2
443,052 - -0.6
443,052 - -0.9
443,054 - +0.8
443,055 + -0.5
443,058 - +1.1
443,058 + -0.2
443,058 + +0.4
443,062 + +0.8
443,064 + +1.1
443,069 - +0.5
443,069 - +0.3
443,073 - -1.7
443,073 - +0.2
443,078 - +0.5
443,083 - -1.2
443,087 - +0.6
443,090 + -0.3
443,090 + +1.8
443,092 - -2.1
443,096 - -1.4
443,096 - +1.6
443,097 + +0.9
443,099 + +0.9
443,102 - -0.1
443,105 + -0.9
443,106 - -0.9
443,108 - -0.3
443,109 + +1.9
443,109 + -0.5
443,112 - -0.3
443,112 - -1.7
443,113 - -1.4
443,114 - -0.4
443,115 - +0.4
443,118 - +0.4
443,120 - +0.4
443,121 + -1.3
443,123 - +1.0
443,125 - +0.1
443,126 - -0.7
443,128 - -0.4
443,129 - +1.1
443,130 + +0.1
443,131 + +0.1
443,135 + +0.6
443,135 - -0.4
443,135 + -2.7
443,136 + -1.7
443,136 - -0.2
443,136 + +0.5
443,138 + +0.9
443,138 - -0.8
443,139 + -0.1
443,143 - -1.5
443,143 + -0.8
443,145 - +1.6
443,150 + +0.9
443,166 + -2.4
443,195 - -1.7
443,200 + +0.3
443,201 + -0.2
443,203 - -0.5
443,206 - +0.4
443,211 - -1.8
443,211 - -0.1
443,211 + +0.1
443,214 + +0.4
443,215 - -0.3
443,220 - +0.1
443,222 - -1.7
443,222 + -0.1
443,222 - -0.9
443,222 + +1.1
443,223 - +0.5
443,228 - -0.1
443,233 - -0.1
443,236 - -1.3
443,236 - -1.8
443,238 + -1.0
443,238 - +0.4
443,240 + +0.3
443,241 + -0.1
443,242 + -0.0
443,245 - +0.6
443,245 - +0.1
443,246 + -0.9
443,247 + -1.7
443,248 + +1.5
443,249 + +0.7
443,251 + -1.6
443,253 + -0.5
443,257 + +0.1
443,257 + -0.4
443,257 + -0.4
443,262 - -0.9
443,264 - +0.2
443,264 + -1.1
443,266 - +1.2
443,268 + +0.2
443,268 + +0.5
443,273 + +0.4
443,282 - +1.0
443,283 + +0.4
443,289 + -0.7
443,297 + -0.9
443,300 - -0.9
443,300 - -1.1
443,367 - -0.3
443,379 + -0.4
443,397 + -0.5
443,408 + -1.2
443,409 + +0.0
443,411 - -0.2
443,414 + -0.2
443,415 - +0.9
443,416 + -0.7
443,416 - -0.3
443,418 + -0.8
443,420 - +1.6
443,420 - -0.1
443,424 - -0.7
443,428 - -1.4
443,430 - +0.5
443,430 - -1.0
443,430 + -1.3
443,436 + -0.6
443,436 + -0.1
443,439 + +0.4
443,470 + +0.6

Or see this region's nucleotide sequence