Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11537 and 11538 are separated by 647 nucleotides mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1,526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2,174 to 3,237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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12 + -0.1
12 + -0.4
15 + +0.5
16 + +1.2
18 + -1.4
22 + -4.3
25 + -0.3
57 - -0.1
61 - -1.1
62 + -1.9
62 + -0.7
66 + -0.9
72 + -1.7
72 + -0.0
72 + -0.3
75 + +1.4
78 - -0.9
105 + -0.1
110 - -2.0
114 + +0.1
115 + -1.2
118 + +0.3
122 + -0.1
122 - -1.4
124 + -1.2
135 + -0.0
147 + +0.9
157 + +0.5
161 + -0.2
168 + -0.6
174 + -0.9
177 - +0.6
228 + +1.2
247 + +0.4
252 - -0.8
253 - +0.1
255 + +0.3
258 + +0.1
264 - +0.7
269 + -0.2
269 - +0.4
274 + +0.3
275 - -0.7
277 + -1.5
280 + +0.7
280 + -1.1
283 - +0.4
285 - +1.4
287 + +0.0
287 + +0.1
288 + -0.6
292 - -1.1
293 + -0.2
298 + -1.6
305 - +0.1
314 + -0.1
320 + -0.7
368 + -0.3
370 - +0.4
372 + -0.5
382 + -2.5
384 + +0.1
391 + +0.1
391 - -0.8
397 + -0.7
397 - -0.6
402 + -0.8
405 + +1.1
423 - -3.3
430 + -0.4
440 + +0.6
446 + -0.1
470 + +1.2
524 + +1.2
532 + -2.9
545 - +0.2
557 + -0.2
569 + -0.8
570 - -0.4
583 + +0.6
584 + +0.9
603 - -0.8
603 + +1.6
634 - 11537 mRNA_3169 0.11 -0.0
636 + 11537 mRNA_3169 0.11 -2.0
646 + 11537 mRNA_3169 0.12 +0.3
661 + 11537 mRNA_3169 0.13 +0.4
667 + 11537 mRNA_3169 0.14 -0.1
698 + 11537 mRNA_3169 0.17 -0.4
704 - 11537 mRNA_3169 0.18 -0.7
705 - 11537 mRNA_3169 0.18 -0.1
721 - 11537 mRNA_3169 0.19 +0.3
725 + 11537 mRNA_3169 0.20 -1.4
738 - 11537 mRNA_3169 0.21 +0.6
849 + 11537 mRNA_3169 0.32 +1.1
871 + 11537 mRNA_3169 0.34 -1.9
883 + 11537 mRNA_3169 0.35 -0.0
894 + 11537 mRNA_3169 0.37 +0.5
895 + 11537 mRNA_3169 0.37 +1.4
922 + 11537 mRNA_3169 0.39 -0.4
965 - 11537 mRNA_3169 0.44 -1.7
1,012 - 11537 mRNA_3169 0.48 +0.7
1,026 + 11537 mRNA_3169 0.50 -1.7
1,026 + 11537 mRNA_3169 0.50 -1.2
1,105 + 11537 mRNA_3169 0.58 -2.2
1,123 + 11537 mRNA_3169 0.60 -0.8
1,141 + 11537 mRNA_3169 0.61 +1.9
1,142 + 11537 mRNA_3169 0.61 -0.6
1,165 + 11537 mRNA_3169 0.64 -0.6
1,174 - 11537 mRNA_3169 0.65 +0.2
1,174 + 11537 mRNA_3169 0.65 +0.4
1,259 + 11537 mRNA_3169 0.73 -0.9
1,265 + 11537 mRNA_3169 0.74 +0.1
1,268 + 11537 mRNA_3169 0.74 -1.6
1,269 - 11537 mRNA_3169 0.74 +0.1
1,288 - 11537 mRNA_3169 0.76 +0.2
1,297 + 11537 mRNA_3169 0.77 +0.9
1,303 - 11537 mRNA_3169 0.78 -0.2
1,399 + 11537 mRNA_3169 0.87 -0.7
1,412 - 11537 mRNA_3169 0.88 -0.8
1,419 - 11537 mRNA_3169 0.89 -0.1
1,423 - 11537 mRNA_3169 0.90 -3.5
1,429 - +0.6
1,453 + +1.0
1,459 + +0.1
1,459 + -0.9
1,460 - -0.1
1,461 + +0.0
1,462 + +0.6
1,467 + +0.4
1,470 - -2.1
1,474 - +0.1
1,485 + -2.5
1,520 + -0.0
1,523 + +0.7
1,531 - -0.9
1,537 + -0.0
1,541 + +0.7
1,562 + -0.9
1,567 + +0.4
1,572 + +1.6
1,582 - -1.0
1,584 - +3.1
1,589 + +0.4
1,596 - +0.3
1,601 - +1.7
1,602 + -0.3
1,605 + -0.0
1,609 + -0.0
1,616 + +0.5
1,636 + +1.1
1,654 + +1.2
1,656 - -0.9
1,666 + -1.1
1,675 - +0.8
1,682 - -0.0
1,697 - +0.2
1,709 + -1.7
1,709 - -1.4
1,711 + -0.8
1,718 - +0.2
1,719 + -0.4
1,722 - -0.0
1,723 + +0.3
1,725 - -2.7
1,725 - -0.9
1,727 + -1.2
1,730 + -0.8
1,731 + +0.4
1,732 + -2.5
1,732 + +0.7
1,734 + +2.3
1,734 + -0.7
1,734 + -0.6
1,739 - -0.7
1,740 + +0.0
1,744 - +1.8
1,747 + -0.5
1,749 + -1.2
1,759 + -0.8
1,759 + -0.9
1,759 + +1.2
1,761 + -1.1
1,763 + -1.1
1,765 + +1.5
1,767 + -2.8
1,769 + -0.4
1,772 + +1.4
1,772 + -1.8
1,774 + -0.1
1,774 + +0.2
1,775 + +1.0
1,776 - +0.0
1,776 + -2.8
1,777 + -1.0
1,778 + +0.1
1,778 - -1.0
1,781 - +1.8
1,783 - -1.3
1,783 - -3.6
1,783 - -2.4
1,783 - +1.0
1,784 + -0.0
1,789 + +0.6
1,789 - -1.4
1,791 + +1.4
1,792 + -0.9
1,793 + +1.1
1,795 + +0.7
1,796 + -2.6
1,796 - -2.3
1,798 + -0.3
1,800 + +0.2
1,801 + -0.3
1,805 + +0.4
1,805 + -0.0
1,807 + -0.9
1,813 - -1.7
1,814 + -0.8
1,814 + -0.1
1,818 - -0.3
1,851 - +0.3
1,874 + -2.7
1,881 - -0.4
1,885 - -1.0
1,891 - -0.5
1,896 - +0.3
1,912 + -1.3
1,912 + -0.5
1,914 - -0.3
1,916 - -0.1
1,917 - -1.9
1,919 + -0.4
1,922 - +0.2
1,923 - -1.5
1,934 - -2.5
1,935 + -0.8
1,938 - -0.8
1,938 - -0.2
1,940 - +0.8
1,941 + +0.4
1,941 + -0.1
1,942 + -1.2
1,943 - -2.5
1,944 + -0.4
1,944 - -0.4
1,945 - +0.2
1,945 + -0.4
1,946 - -1.2
1,947 + -0.3
1,960 - -0.9
1,968 + -0.9
1,980 + -2.3
2,015 + +0.3
2,067 - +1.1
2,081 - -0.6
2,091 + -0.8
2,220 + +0.6
2,229 - -2.0
2,235 - -2.1
2,237 - -2.0
2,242 + -2.8
2,242 - -0.4
2,245 - -0.4
2,248 - +2.0
2,251 + +0.7
2,254 - -0.5
2,261 + +0.2
2,262 - -0.4
2,266 + -2.1
2,268 + -0.4
2,400 + 11538 mRNA_3170 0.21 -1.0
2,401 - 11538 mRNA_3170 0.21 +0.9
2,404 + 11538 mRNA_3170 0.22 +0.2
2,414 + 11538 mRNA_3170 0.23 +0.1
2,420 - 11538 mRNA_3170 0.23 -1.7
2,439 + 11538 mRNA_3170 0.25 -0.1
2,446 + 11538 mRNA_3170 0.26 -2.0
2,470 - 11538 mRNA_3170 0.28 -3.4
2,516 - 11538 mRNA_3170 0.32 -0.7

Or see this region's nucleotide sequence