Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3227

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11595 and 11596 are separated by 421 nucleotides mRNA_3227: 11595 - K12854 SNRNP200, BRR2 pre-mRNA-splicing helicase BRR2, at 143,143 to 150,132 11595 mRNA_3228: 11596 - Hypothetical Protein, at 150,554 to 152,280 11596

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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142,331 + -1.8
142,333 - -1.4
142,628 + -0.0
142,774 + -2.6
142,776 - -0.5
142,781 + +0.7
142,793 - +0.3
142,809 + +0.6
142,833 + +0.3
142,950 - +1.3
149,362 + 11595 mRNA_3227 0.89 -0.1
150,642 + +0.5
150,682 + +0.6
150,721 + -0.6
150,806 + 11596 mRNA_3228 0.15 -0.2
150,824 + 11596 mRNA_3228 0.16 +0.1
150,847 - 11596 mRNA_3228 0.17 +0.3
150,860 + 11596 mRNA_3228 0.18 -0.5
150,894 + 11596 mRNA_3228 0.20 +0.1
151,015 + 11596 mRNA_3228 0.27 -0.8
151,122 - 11596 mRNA_3228 0.33 -1.9

Or see this region's nucleotide sequence