Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3239

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11606 and 11607 are separated by 141 nucleotides mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184,726 to 188,428 11606 mRNA_3239: 11607 - K15425 PPP4R2 serine/threonine-protein phosphatase 4 regulatory subunit 2, at 188,570 to 189,872 11607

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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187,714 + 11606 mRNA_3238 0.81 -1.6
187,717 - 11606 mRNA_3238 0.81 -1.4
187,720 + 11606 mRNA_3238 0.81 -0.3
188,288 + +0.7
188,346 + -2.2
188,674 + -0.5
188,680 - +0.8
188,738 - 11607 mRNA_3239 0.13 -1.6
188,782 + 11607 mRNA_3239 0.16 +1.5
188,789 + 11607 mRNA_3239 0.17 -1.2
188,792 - 11607 mRNA_3239 0.17 -0.6
188,985 + 11607 mRNA_3239 0.32 -0.3
189,049 - 11607 mRNA_3239 0.37 -0.1
189,207 - 11607 mRNA_3239 0.49 +0.8
189,221 - 11607 mRNA_3239 0.50 -2.9
189,348 + 11607 mRNA_3239 0.60 -0.5
189,385 - 11607 mRNA_3239 0.63 +0.3
189,537 - 11607 mRNA_3239 0.74 -1.1
189,663 - 11607 mRNA_3239 0.84 -1.4
189,800 + -1.2
189,862 - +0.2
189,953 - -0.2
190,061 + +0.2
190,075 + -0.0
190,081 + +0.8
190,236 - +0.3
190,244 + -0.0
190,248 - -3.1
190,265 + +1.1
190,433 - +0.6
190,548 - -1.1
190,596 + -0.6

Or see this region's nucleotide sequence