Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3262

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11629 and 11630 are separated by 349 nucleotides11630 and 11631 are separated by 103 nucleotides mRNA_3261: 11629 - K00236 SDHC, SDH3 succinate dehydrogenase (ubiquinone) cytochrome b560 subunit, at 238,645 to 239,483 11629 mRNA_3262: 11630 - SUPERFAMILY--SSF47616, at 239,833 to 240,831 11630 mRNA_3263: 11631 - BLAST Receptor-activated Ca2+-permeable cation channel [Rho..., at 240,935 to 243,648 11631

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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239,606 + -0.0
239,608 - -0.2
239,627 + +0.3
239,635 - +0.3
239,768 - -1.6
240,055 - 11630 mRNA_3262 0.22 -0.9
240,981 - +2.2
241,064 + +1.4
241,230 - 11631 mRNA_3263 0.11 -0.5
241,673 + 11631 mRNA_3263 0.27 +0.6
241,675 + 11631 mRNA_3263 0.27 +0.2
241,701 + 11631 mRNA_3263 0.28 +3.4
241,822 - 11631 mRNA_3263 0.33 +2.1

Or see this region's nucleotide sequence