Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3275

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11642 and 11643 are separated by 57 nucleotides11643 and 11644 are separated by 188 nucleotides mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263,216 to 265,708 11642 mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265,766 to 267,917 11643 mRNA_3276: 11644 - BLAST Nuclease PA3 [Grifola frondosa], at 268,106 to 268,881 11644

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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264,861 - 11642 mRNA_3274 0.66 -1.0
264,899 - 11642 mRNA_3274 0.68 -1.3
264,950 - 11642 mRNA_3274 0.70 -1.2
265,311 - 11642 mRNA_3274 0.84 -0.7
265,430 + 11642 mRNA_3274 0.89 +1.6
265,455 - 11642 mRNA_3274 0.90 +0.5
265,468 + +0.6
265,536 + -0.5
265,537 - -0.6
265,549 + -0.0
265,549 + -2.2
265,649 - +0.8
265,655 - -0.0
265,658 + -0.6
265,658 + -0.2
265,666 - -0.3
265,685 - +0.1
265,689 + +0.1
265,700 - -0.2
265,705 + -0.9
265,786 - -0.1
265,818 + +2.2
265,821 + -1.1
265,824 - +0.3
265,826 + -0.1
265,827 + -1.0
265,828 + +0.1
265,835 + -0.3
265,835 + -0.9
265,836 - -0.1
265,839 - +0.1
265,839 - +0.2
265,841 + -0.7
265,845 + -2.2
265,852 + -0.8
265,853 - -1.7
265,853 - -1.1
265,855 - -3.3
265,856 + +0.2
265,856 + -0.8
265,856 - -0.9
265,866 + +0.6
265,867 + -1.4
265,868 - -1.2
265,871 - +0.4
265,872 - +0.5
265,873 + -2.3
265,874 - +0.5
265,874 + +0.3
265,875 - +0.3
265,876 - +0.0
265,878 - -1.8
265,879 - -1.7
265,881 - -0.5
265,882 - -0.1
265,883 + +0.2
265,883 + +1.1
265,889 - -0.1
265,889 - -0.7
265,892 + -0.2
265,893 + +0.6
265,893 - +0.2
265,898 - -2.1
265,899 - +0.6
265,899 + -0.1
265,901 + -0.5
265,902 + +1.4
265,907 - -0.8
265,907 - +0.2
265,910 - +0.6
265,934 - +0.6
265,947 - -3.0
265,949 - -0.4
265,949 - +0.4
265,952 - -1.0
265,952 - +1.3
265,955 + +1.1
265,956 + -0.8
265,956 + -0.6
265,969 + -0.4
265,969 + -2.3
265,983 - 11643 mRNA_3275 0.10 +0.2
265,988 + 11643 mRNA_3275 0.10 -2.5
265,995 + 11643 mRNA_3275 0.11 +0.0
266,013 - 11643 mRNA_3275 0.11 +0.3
266,027 - 11643 mRNA_3275 0.12 -2.1
266,051 - 11643 mRNA_3275 0.13 -0.6
266,053 - 11643 mRNA_3275 0.13 -0.7
266,062 - 11643 mRNA_3275 0.14 +0.2
266,156 + 11643 mRNA_3275 0.18 +2.5
266,164 - 11643 mRNA_3275 0.18 -1.6
266,171 + 11643 mRNA_3275 0.19 +0.5
266,174 - 11643 mRNA_3275 0.19 -0.9
266,201 - 11643 mRNA_3275 0.20 -1.8
266,209 - 11643 mRNA_3275 0.21 -0.9
266,226 - 11643 mRNA_3275 0.21 -0.2
266,341 - 11643 mRNA_3275 0.27 +0.3
266,638 + 11643 mRNA_3275 0.41 -2.2
267,036 - 11643 mRNA_3275 0.59 -0.3
267,053 - 11643 mRNA_3275 0.60 -0.5
267,066 - 11643 mRNA_3275 0.60 -1.2
267,199 - 11643 mRNA_3275 0.67 -1.1
267,485 - 11643 mRNA_3275 0.80 -1.0
267,611 + 11643 mRNA_3275 0.86 -1.7
267,679 - 11643 mRNA_3275 0.89 +0.6
267,679 - 11643 mRNA_3275 0.89 +0.9
267,805 - +1.0
268,219 - 11644 mRNA_3276 0.15 -0.2
268,350 + 11644 mRNA_3276 0.31 -0.9
268,351 - 11644 mRNA_3276 0.32 -1.3
268,364 + 11644 mRNA_3276 0.33 +0.5
268,486 - 11644 mRNA_3276 0.49 +0.2
268,491 + 11644 mRNA_3276 0.50 +0.7
268,624 - 11644 mRNA_3276 0.67 +0.1
268,798 + 11644 mRNA_3276 0.89 +0.9
268,884 - -0.3
268,899 + +0.7
268,908 + -1.9
268,916 - -1.5
268,917 - -2.6

Or see this region's nucleotide sequence