Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3285

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11652 and 11653 are separated by 620 nucleotides11653 and 11654 are separated by 639 nucleotides mRNA_3284: 11652 - BLAST something about silencing, SAS, complex subunit 4 [Rh..., at 291,181 to 293,324 11652 mRNA_3285: 11653 - KOG2069 Golgi transport complex subunit, at 293,945 to 296,560 11653 mRNA_3286: 11654 - Hypothetical Protein, at 297,200 to 297,720 11654

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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293,408 + -3.6
293,444 + -0.1
293,557 - +1.0
293,590 - -0.4
293,594 + +1.8
293,706 - -1.4
293,822 - -1.5
293,834 - -0.5
294,135 - +0.2
295,466 + 11653 mRNA_3285 0.58 -0.2
295,474 - 11653 mRNA_3285 0.58 -0.1
295,730 + 11653 mRNA_3285 0.68 -0.0
296,036 - 11653 mRNA_3285 0.80 +0.4
296,641 - -1.8
296,653 + -0.1
296,671 + -0.1
296,771 + -1.8
297,134 - -0.1
297,394 + 11654 mRNA_3286 0.37 -0.9
297,528 - 11654 mRNA_3286 0.63 +0.3

Or see this region's nucleotide sequence