Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3364

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11731 and 11732 are separated by 74 nucleotides mRNA_3363: 11731 - K02871 RP-L13, MRPL13, rplM large subunit ribosomal protein L13, at 499,965 to 500,841 11731 mRNA_3364: 11732 - K15423 PPP4C serine/threonine-protein phosphatase 4 catalytic subunit, at 500,916 to 502,448 11732

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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499,954 - -1.4
500,007 - +0.4
500,014 - +0.9
500,909 + -2.2
501,031 + -0.9
501,033 - -2.5
501,038 + -1.9
501,052 - -3.1
501,478 + 11732 mRNA_3364 0.37 -3.5
501,594 - 11732 mRNA_3364 0.44 -0.3
501,765 - 11732 mRNA_3364 0.55 -2.3
502,050 - 11732 mRNA_3364 0.74 -2.7
502,172 - 11732 mRNA_3364 0.82 -2.5
502,327 - -0.4
502,811 + +0.9
502,816 + -2.5
502,863 + -0.6
502,920 - -0.2
502,926 + +0.8
503,055 + +1.3
503,345 - +0.0
503,353 + +1.0
503,356 - -0.7
503,363 + +0.7
503,363 + +0.1
503,368 + +0.8
503,368 - -1.3
503,377 - -1.1
503,378 - +0.2
503,418 - -0.4

Or see this region's nucleotide sequence