Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3530

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11897 and 11898 are separated by 614 nucleotides mRNA_3529: 11897 - Hypothetical Protein, at 318,059 to 319,264 11897 mRNA_3530: 11898 - K14007 SEC24 protein transport protein SEC24, at 319,879 to 322,720 11898

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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318,892 - 11897 mRNA_3529 0.69 +0.0
318,900 + 11897 mRNA_3529 0.70 +0.6
318,970 + 11897 mRNA_3529 0.76 +1.4
319,000 + 11897 mRNA_3529 0.78 -2.6
319,041 + 11897 mRNA_3529 0.81 +0.3
319,076 + 11897 mRNA_3529 0.84 -1.4
319,201 - -0.5
319,216 + -3.0
319,224 - +0.2
319,308 + -0.2
319,352 + +0.6
319,377 + +0.2
319,519 - +0.4
319,533 + -0.4
319,534 - -0.3
319,536 - -0.2
319,537 + -0.3
319,541 - -3.1
319,546 + +0.5
319,728 - +0.9
319,730 + -1.4
319,864 - -0.3
319,875 + +0.5
322,210 + 11898 mRNA_3530 0.82 -2.1
322,777 - -5.9
323,095 + -2.6
323,649 - +0.1
323,654 - +0.5
323,654 + -0.2
323,676 + -0.3
323,679 - +0.6
323,680 + -1.9

Or see this region's nucleotide sequence