Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3560

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 11927 and 11928 are separated by 437 nucleotides mRNA_3559: 11927 - K18622 ADD adducin, at 47,596 to 49,033 11927 mRNA_3560: 11928 - K06101 ASH1L histone-lysine N-methyltransferase ASH1L, at 49,471 to 51,932 11928

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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48,915 + -0.5
49,465 + -0.6
49,773 + 11928 mRNA_3560 0.12 -0.8
49,785 + 11928 mRNA_3560 0.13 +0.5
49,901 + 11928 mRNA_3560 0.17 +0.2
50,092 - 11928 mRNA_3560 0.25 -0.7
50,356 + 11928 mRNA_3560 0.36 -1.5
50,375 + 11928 mRNA_3560 0.37 +1.1
50,390 + 11928 mRNA_3560 0.37 -1.0
50,522 + 11928 mRNA_3560 0.43 -1.0
50,524 - 11928 mRNA_3560 0.43 -1.3
50,630 - 11928 mRNA_3560 0.47 +1.1
50,752 - 11928 mRNA_3560 0.52 -1.0
50,791 - 11928 mRNA_3560 0.54 -0.1
50,835 + 11928 mRNA_3560 0.55 -0.8
50,934 + 11928 mRNA_3560 0.59 -0.8
51,241 - 11928 mRNA_3560 0.72 -0.2
51,387 - 11928 mRNA_3560 0.78 -1.0
51,583 - 11928 mRNA_3560 0.86 +0.2
51,673 + 11928 mRNA_3560 0.89 -0.7
51,823 - +0.3
51,956 - -0.2
52,097 - -0.4
52,110 - +0.5
52,296 - +0.7

Or see this region's nucleotide sequence