Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3562

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_3562: 11930 - KOG0017 FOG Transposon-encoded proteins with TYA, reverse transcriptase, integrase domains in various combinations, at 59,099 to 59,542 11930

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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58,154 + -0.0
58,311 - -1.8
58,643 + -0.1
58,780 - -2.5
58,870 + -2.1
58,911 - +0.4
58,917 + -1.2
59,096 + -1.5
59,424 - 11930 mRNA_3562 0.73 +0.6
59,522 - -1.4
59,824 - -0.8
59,825 + -0.6
59,956 + -1.7
59,957 - -2.2
60,097 + -0.9
60,098 - -2.3
60,117 + +0.8
60,254 + -0.5
60,260 - +0.4
60,270 + -0.6
60,306 + -1.4
60,394 + -0.7
60,399 + -0.1
60,406 - -1.0
60,413 + -1.0
60,424 + +1.4
60,437 - -0.2

Or see this region's nucleotide sequence