Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3683

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12050 and 12051 are separated by 272 nucleotides12051 and 12052 are separated by 155 nucleotides mRNA_3682: 12050 - K07203 MTOR, FRAP, TOR serine/threonine-protein kinase mTOR, at 332,807 to 341,262 12050 mRNA_3683: 12051 - KOG0069 Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily), at 341,535 to 343,207 12051 mRNA_3684: 12052 - K05955 FNTA protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha, at 343,363 to 344,847 12052

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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341,242 - -2.0
341,426 + +0.6
341,537 + -1.5
341,560 + -1.0
341,940 - 12051 mRNA_3683 0.24 -0.2
342,132 + 12051 mRNA_3683 0.36 +0.5
342,437 + 12051 mRNA_3683 0.54 -0.1
342,484 - 12051 mRNA_3683 0.57 -1.1
342,548 - 12051 mRNA_3683 0.61 -1.2
342,844 + 12051 mRNA_3683 0.78 +0.1
342,957 - 12051 mRNA_3683 0.85 -0.4
342,965 - 12051 mRNA_3683 0.85 -2.6
342,976 + 12051 mRNA_3683 0.86 +0.8
342,978 + 12051 mRNA_3683 0.86 -1.7
343,107 - +0.8
343,107 - +0.6
343,117 + +0.3
343,134 - -1.4
343,273 + -0.6

Or see this region's nucleotide sequence