Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3724

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12092 and 12093 are separated by 416 nucleotides mRNA_3724: 12092 - KOG1744 Histone H2B, at 437,180 to 437,338 12092 mRNA_3725: 12093 - K18168 SDHAF2, SDH5 succinate dehydrogenase assembly factor 2, at 437,755 to 438,417 12093

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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436,668 - -1.6
436,688 + -0.4
436,693 + -1.2
436,907 - +1.8
436,979 - -2.1
436,986 + -0.1
437,437 - -0.2
437,447 + -3.1
437,832 - 12093 mRNA_3725 0.12 -0.1

Or see this region's nucleotide sequence