Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3834

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12201 and 12202 are separated by 922 nucleotides12202 and 12203 are separated by 235 nucleotides mRNA_3833: 12201 - K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit, at 692,168 to 694,484 12201 mRNA_3834: 12202 - Hypothetical Protein, at 695,407 to 697,402 12202 mRNA_3835: 12203 - K09260 MEF2A MADS-box transcription enhancer factor 2A, at 697,638 to 699,790 12203

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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694,855 - +1.6
694,876 + +0.1
694,992 - -0.4
695,007 - -0.2
695,036 + -0.0
695,141 - +0.9
695,154 + -1.0
695,213 + -0.2
696,061 + 12202 mRNA_3834 0.33 -1.0
696,282 - 12202 mRNA_3834 0.44 -0.5
696,776 + 12202 mRNA_3834 0.69 +0.4
696,817 - 12202 mRNA_3834 0.71 -2.5
697,664 - +0.3

Or see this region's nucleotide sequence