Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3877

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12244 and 12245 are separated by 417 nucleotides mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816 12244 mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789 12245

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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806,236 - 12244 mRNA_3876 0.72 -0.9
806,239 - 12244 mRNA_3876 0.72 -0.3
806,284 - 12244 mRNA_3876 0.74 -0.6
806,517 - 12244 mRNA_3876 0.86 +0.3
806,669 - -0.4
807,109 + -1.2
809,186 - -2.1
809,194 + +0.3
809,208 - -2.2
809,215 + +0.4
809,232 + -0.2
809,355 - -0.7
809,355 - +0.3
809,387 - -0.0
809,404 + +0.5
809,511 + +1.3
809,517 - +1.4
809,519 - -0.1
809,527 - -0.4
809,529 - -1.2
809,531 - -0.0
809,535 + -0.3
809,546 - +1.2
809,548 + -1.7
809,548 + -0.1
809,556 + +1.2
809,585 - +0.7
809,586 + -1.3
809,596 - -0.4
809,726 + -1.3
809,729 + +0.3

Or see this region's nucleotide sequence