Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3926

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12293 and 12294 are separated by 319 nucleotides12294 and 12295 are separated by 157 nucleotides mRNA_3925: 12293 - Hypothetical Protein, at 918,753 to 919,544 12293 mRNA_3926: 12294 - HMMPfam-ER protein Pkr1-PF08636, at 919,864 to 921,279 12294 mRNA_3927: 12295 - K10734 GINS3 GINS complex subunit 3, at 921,437 to 922,417 12295

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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918,890 - 12293 mRNA_3925 0.17 +1.5
918,895 + 12293 mRNA_3925 0.18 +2.1
919,043 - 12293 mRNA_3925 0.37 -0.4
919,361 - 12293 mRNA_3925 0.77 +0.0
919,634 - -0.0
919,637 + +1.1
919,665 + +0.2
919,780 - -1.1
919,808 - -1.5
919,810 + -0.5
919,814 - +0.1
919,947 + -0.2
919,961 + -0.3
919,967 + -1.1
919,990 + -0.0
920,100 - 12294 mRNA_3926 0.17 -0.0
920,102 + 12294 mRNA_3926 0.17 +1.1
920,236 - 12294 mRNA_3926 0.26 -0.6
920,419 + 12294 mRNA_3926 0.39 +0.6
920,547 - 12294 mRNA_3926 0.48 -1.6
920,558 - 12294 mRNA_3926 0.49 -0.9
920,676 - 12294 mRNA_3926 0.57 +1.4
921,127 - 12294 mRNA_3926 0.89 -1.2
921,439 + -0.6

Or see this region's nucleotide sequence