Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3992

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12359 and 12360 are separated by 921 nucleotides mRNA_3991: 12359 - KOG1012 Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain, at 1,089,725 to 1,094,754 12359 mRNA_3992: 12360 - KOG0627 Heat shock transcription factor, at 1,095,676 to 1,096,761 12360

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,094,753 - +0.3
1,094,778 - -3.4
1,094,782 + +0.2
1,094,786 + -0.3
1,094,791 - -0.1
1,094,799 - -0.5
1,094,807 - +0.4
1,094,812 - -1.3
1,094,813 + -0.4
1,094,815 - -1.0
1,094,815 - +0.9
1,094,815 - +1.1
1,094,820 - -2.1
1,094,822 - -2.1
1,094,823 - +0.3
1,094,824 - +0.2
1,094,826 - +0.2
1,094,831 + -1.1
1,094,841 + -0.8
1,094,849 + -0.6
1,094,851 - -0.2
1,094,861 - +0.5
1,094,862 - -0.6
1,094,895 - -1.9
1,094,937 + -0.4
1,095,030 - -1.2
1,095,032 + -1.4
1,095,041 + -1.7
1,095,043 + +0.0
1,095,044 - -0.8
1,095,050 - -1.1
1,095,051 + +1.0
1,095,058 + +1.1
1,095,080 - -1.2
1,095,083 + -1.3
1,095,083 + -1.9
1,095,200 - -0.9
1,095,202 + -1.6
1,095,203 + +0.2
1,095,211 - +0.4
1,095,221 + +0.9
1,095,222 + -0.0
1,095,238 + +1.2
1,095,240 + -0.3
1,095,251 - -1.2
1,095,271 + +0.5
1,095,294 - -0.0
1,095,309 - +0.1
1,095,315 + -0.0
1,095,317 + -0.7
1,095,326 - +1.3
1,095,333 - +0.0
1,095,337 - -0.7
1,095,343 - -0.5
1,095,343 - -0.9
1,095,347 - +1.1
1,095,349 - -0.4
1,095,367 + +0.3
1,095,464 + +0.6
1,095,480 - -1.9
1,095,480 + -0.8
1,095,482 - -1.2
1,095,485 + -1.0
1,095,485 + +0.7
1,095,508 + -0.6
1,095,509 - +0.2
1,095,512 - +0.4
1,095,532 + +0.1
1,095,614 + -0.6
1,095,622 - -0.1
1,095,628 - -1.5
1,095,631 - +0.1
1,095,632 - -1.9
1,095,632 - -0.6
1,095,652 - -0.3
1,095,659 + +0.9
1,095,660 - -1.0
1,095,667 + -2.5
1,095,820 - 12360 mRNA_3992 0.13 -1.5
1,095,950 + 12360 mRNA_3992 0.25 -3.3
1,095,950 - 12360 mRNA_3992 0.25 -1.3
1,095,966 - 12360 mRNA_3992 0.27 +0.5
1,095,974 - 12360 mRNA_3992 0.27 -0.8
1,096,120 - 12360 mRNA_3992 0.41 -0.0
1,096,127 + 12360 mRNA_3992 0.42 -0.8
1,096,421 - 12360 mRNA_3992 0.69 +0.0
1,096,569 - 12360 mRNA_3992 0.82 -0.7
1,096,690 + +0.5
1,096,835 - -0.2
1,097,000 - -0.7
1,097,150 - +0.0
1,097,238 - -0.9
1,097,291 + -0.8
1,097,440 + +0.4
1,097,443 + -1.6
1,097,449 + -0.9
1,097,452 - -2.9
1,097,453 - +0.4
1,097,453 + +0.3
1,097,461 + -2.3
1,097,467 - +1.8
1,097,468 - -0.1
1,097,469 + -1.5
1,097,470 - -1.1
1,097,472 - -2.6
1,097,488 - -1.1
1,097,489 + +0.4
1,097,491 + -1.6
1,097,496 - -1.2
1,097,503 - -0.6
1,097,505 + -0.9
1,097,516 - -0.1
1,097,533 - +0.9
1,097,541 + +0.2
1,097,573 - +0.2
1,097,583 + -0.1
1,097,601 + -0.8
1,097,603 + -0.6
1,097,607 + -0.6
1,097,613 + +0.1
1,097,622 - -0.3
1,097,722 + +0.2
1,097,729 - -1.1
1,097,761 - -0.9

Or see this region's nucleotide sequence