Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4072

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12439 and 12440 are separated by 683 nucleotides mRNA_4071: 12439 - BLAST putative upf0132 domain-containing protein [Diaporthe..., at 1,285,079 to 1,285,837 12439 mRNA_4072: 12440 - K16575 ACTR1, ARP1 centractin, at 1,286,521 to 1,288,236 12440

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,285,584 - 12439 mRNA_4071 0.67 -1.3
1,285,868 - +0.6
1,285,876 - -0.5
1,286,147 - +0.3
1,286,148 - +0.0
1,286,154 + +0.0
1,286,161 - +0.7
1,288,340 - +1.0
1,288,773 - -3.9
1,289,010 + +0.2
1,289,011 - +0.3

Or see this region's nucleotide sequence