Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4181

Experiment: Sorted High BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12548 and 12549 are separated by 337 nucleotides12549 and 12550 are separated by 772 nucleotides mRNA_4180: 12548 - K03260 EIF4G translation initiation factor 4G, at 1,548,392 to 1,550,884 12548 mRNA_4181: 12549 - Hypothetical Protein, at 1,551,222 to 1,553,388 12549 mRNA_4182: 12550 - K13288 orn, REX2, REXO2 oligoribonuclease, at 1,554,161 to 1,555,375 12550

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
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1,551,388 - +0.6
1,553,907 - +1.1
1,553,909 - -1.1
1,553,910 + +0.3
1,553,924 - -1.6
1,553,945 + -1.1
1,553,948 + -1.3
1,554,231 - +0.1
1,554,239 + -0.6
1,554,240 - -1.2
1,554,369 - 12550 mRNA_4182 0.17 -4.2

Or see this region's nucleotide sequence