Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4217

Experiment: Sorted High BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12584 and 12585 are separated by 318 nucleotides12585 and 12586 are separated by 517 nucleotides mRNA_4216: 12584 - K13123 GPATCH1 G patch domain-containing protein 1, at 1,632,633 to 1,635,917 12584 mRNA_4217: 12585 - K14830 MAK11, PAK1IP1 protein MAK11, at 1,636,236 to 1,637,979 12585 mRNA_4218: 12586 - K17491 SMEK, PPP4R3 protein phosphatase 4 regulatory subunit 3, at 1,638,497 to 1,642,867 12586

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted High BODIPY Gate
remove
1,635,384 - 12584 mRNA_4216 0.84 +0.5
1,635,491 + 12584 mRNA_4216 0.87 -1.1
1,635,986 - -0.6
1,635,997 - +0.1
1,638,017 - -0.2
1,638,026 - -1.5
1,638,028 + -1.4
1,638,036 + +0.2
1,638,049 + -0.7
1,638,456 - -0.6
1,638,512 + -0.9
1,638,529 + -0.9
1,638,591 - +0.3
1,638,727 - -1.1
1,638,766 - +0.6
1,638,874 + -1.2
1,638,874 - -1.6

Or see this region's nucleotide sequence